Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00091
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.48 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 172 LDVLTMLVFQMGRWSLMCTLYRLYRLS 92
           + VLT++ F M R+  +C   R+Y +S
Sbjct: 127 VSVLTIVAFSMERYLAICHPLRVYTIS 153


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 371 MLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMN 261
           +L K      +K I + Y+N    G +  +S F+L+N
Sbjct: 50  ILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLN 86


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 335 IIVKMYQNLDHFGNFQCKSIFILM 264
           ++ K+Y N       +C ++F+LM
Sbjct: 685 VLYKIYLNTMESHEVRCTAVFLLM 708


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 200 EYLSSGEKRAGCADNVGFPNGSMVANVYSLSPLSF 96
           E +++GE        +G   GS+ A+  +L+ L F
Sbjct: 752 ELVTAGELFGRSGYGIGLQKGSLWADAVTLAILDF 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,222
Number of Sequences: 438
Number of extensions: 2576
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)