Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00047
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.62 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 276 GKKGRDANRCSVAGEVLLMAIRIS 205
           GK+G D  RC++ G+   +  R++
Sbjct: 85  GKEGEDPYRCNICGKTFAVPARLT 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 628 YENVSFNHRMFNINYENKTK 569
           Y N ++N+  +N NY N  K
Sbjct: 333 YNNNNYNNNNYNNNYNNNCK 352


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 140 YTIRLNHNKSTLTLFRHHEILLTCSI 63
           Y +  + +K T T+  +H I L CS+
Sbjct: 61  YPLPYSGSKCTWTITSYHRINLKCSL 86


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -1

Query: 149 TTLYTIRLNHNKSTLTLFRHHEILLTCSINYTCTTAGNDLKSGRW 15
           T +  +  + N  T+ L + H       + Y C   G+ L  G W
Sbjct: 506 TVIVMMNFSKNPVTVNLTKLHPP--ADLVVYACNVVGSGLSHGNW 548


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +2

Query: 296  SSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRN 436
            S+  V  +   G  +V +G+Q  G      +QP T++  +  +  +N
Sbjct: 909  SNSQVQGVAVPGSGIVASGQQHAGGWQSIYAQPQTVQDQIVSEYYQN 955


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 498 SVNQRPISFLADSTLSEPW 442
           S+N+  ++++AD  L++ W
Sbjct: 43  SINEESMTYVADIFLAQSW 61


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -2

Query: 49  LQPAMI*KVAGGSWQL 2
           + PA++ ++ GG+W+L
Sbjct: 91  MPPAVLLQLTGGTWEL 106


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 107 LTLFRHHEILLTCSIN 60
           L + +HH  +  CS+N
Sbjct: 123 LQMTKHHNFIKVCSVN 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,805
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)