Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D18
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.4  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 236 PFAVRNYPNRLKFXQRXYRYLK 171
           PF  +NYP   +   R Y+ +K
Sbjct: 81  PFMQQNYPYEWQLILRRYKIMK 102


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 277 LFQHTQVXNK*IWKKISHSIPYTCHLSKKLPSY 375
           L+ H  + N+   +++S+ +PY      + P Y
Sbjct: 260 LYSHKLLLNRYYLERLSNDLPYLEEFDWQKPFY 292


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 327 RYFFPYSFI 301
           R+FFP+SF+
Sbjct: 364 RFFFPFSFL 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,761
Number of Sequences: 438
Number of extensions: 2231
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)