Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B10
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 534 SLHATAGVGELVSLEV 487
           +++AT G+GELVSL V
Sbjct: 181 AVNATTGMGELVSLAV 196


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 32  RRQNSNFERFLKKKNLNS 85
           RR   N+ERF  K N+NS
Sbjct: 492 RRACMNYERFTYKININS 509


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 32  RRQNSNFERFLKKKNLNS 85
           RR   N+ERF  K N+NS
Sbjct: 492 RRACMNYERFTYKININS 509


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 26  NERRQNSNFERFLKKKNLNSSIL--VPVFLVGSNDEG 130
           N+   N N ERF K K   +++       +  SNDEG
Sbjct: 543 NQLNYNENIERFFKSKPPVATMYGSDEEIINSSNDEG 579


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 525 ATAGVGELVSLEV 487
           AT G GELVSL V
Sbjct: 180 ATTGKGELVSLTV 192


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 293 LLGLFNWGDLFLFSGIPINEMCKYAFIISL 204
           LLG + +G  F  + I  + MC  A I++L
Sbjct: 87  LLGYWVFGPRFCDTWIAFDVMCSTASILNL 116


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 519 PSHAVIARPSYSS 557
           P HA + RPSY++
Sbjct: 215 PGHAQMGRPSYTT 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,414
Number of Sequences: 438
Number of extensions: 2684
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)