Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A12
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.85 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 221 KTPAMPEALSRHHRNGNTDKMPFN-HYIIFS*SLKCIHSVLRYIY 352
           KT A+P  L+RH+R  +T + P+   Y   S S+K   SV R I+
Sbjct: 99  KTFAVPARLTRHYRT-HTGEKPYQCEYCSKSFSVKENLSVHRRIH 142


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 LSRHHRNGNTDKMPFNHYIIFS*SLKCI 328
           L+ HHRN +T +M     ++F   L CI
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCI 343


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 146 GSPLSTPAGCESELGFGHYEAS 81
           GS + TP     EL  GHY++S
Sbjct: 752 GSIVGTPVHMAPELLSGHYDSS 773


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 146 GSPLSTPAGCESELGFGHYEAS 81
           GS + TP     EL  GHY++S
Sbjct: 790 GSIVGTPVHMAPELLSGHYDSS 811


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 250  PTPPKRKHRQN 282
            P PP R H QN
Sbjct: 1860 PPPPPRNHDQN 1870


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 89  HNGRSPTHFHIQLGWKE 139
           H+G+S +H H    W +
Sbjct: 397 HSGQSSSHHHGSKSWTQ 413


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 199 NLFRMKLKNSCYARS 243
           N++++ LKN  Y RS
Sbjct: 674 NMYKLDLKNMKYTRS 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,684
Number of Sequences: 438
Number of extensions: 2090
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)