Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0093
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.88 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   2.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 434 GLKHDLGHLLPVGLGVEGGFG 372
           GLK+  G  + VG+G+ GG G
Sbjct: 819 GLKNMAGVFIVVGVGIIGGIG 839


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 544 VRCGDTISGVEHIPVVRPESYSESTAWIATYMAG 443
           VRCG ++ G    P +    Y E    +++ ++G
Sbjct: 108 VRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLSG 141


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 446 GGVEGLKHDLGHLLPVGL 393
           G +EG+K  L H L +G+
Sbjct: 49  GDIEGIKEKLDHFLEMGV 66


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 336  LRVAPEEHPVLLTEAPLNPKANREKM 413
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 544 VRCGDTISGVEHIPVVRPESYSESTAWIATYMAG 443
           VRCG ++ G    P +    Y E    +++ ++G
Sbjct: 124 VRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLSG 157


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 446 GGVEGLKHDLGHLLPVGL 393
           G +EG+K  L H L +G+
Sbjct: 49  GDIEGIKEKLDHFLEMGV 66


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 344 DTQLIVEGVVPDLLHVI 294
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 540 GVETPSPESSTYRWYDRS 487
           G++TP  +  T  W D S
Sbjct: 452 GIDTPKKDGPTKSWSDES 469


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 100 GMCKAGFAGD 129
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 5   RRVQYQRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 130
           R +  +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 355 RLLVMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 5   RRVQYQRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 130
           R +  +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 355 RLLVMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,739
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)