Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0070
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.45 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   3.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   3.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   3.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
 Frame = -3

Query: 481 SPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNFGRNQLLD 302
           S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN   +   D
Sbjct: 220 STAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNESDHN--D 277

Query: 301 GSISLSPLYPVPTIDFTSESLRSSIRVSPDFDLTRH----SSPSFGSQHLC 161
           G +       V   D++  S         D DL ++    S+PS  S   C
Sbjct: 278 GRLRYWRTPSVVVSDYSDYSYLDEKLERNDLDLEKYEGISSTPSQASSCSC 328


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 289 LSPLYPVPTIDF 254
           LSP+YP P +DF
Sbjct: 71  LSPIYPSPMVDF 82


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 289 LSPLYPVPTIDF 254
           LSP+YP P +DF
Sbjct: 71  LSPIYPSPMVDF 82



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 276 TQFRRSISRQNRYGPPSGFP 217
           + F++ I     Y PPSG P
Sbjct: 321 SDFKKLIDNWMTYMPPSGIP 340


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 651 CNDSPAEATSPENGW 695
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 282 PYTQFRRSISRQNRYGPPSGFP 217
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 282 PYTQFRRSISRQNRYGPPSGFP 217
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 282 PYTQFRRSISRQNRYGPPSGFP 217
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 282 PYTQFRRSISRQNRYGPPSGFP 217
           P+   +  I R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 282 PYTQFRRSISRQNRYGPPSGFP 217
           P+   +  I R    GPP+ FP
Sbjct: 353 PFVSIQEQIPRFRYIGPPTSFP 374


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 710 AYTLPLPARVMLNF 751
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,314
Number of Sequences: 438
Number of extensions: 4806
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)