Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0045
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 360 QENISLQYFYHDL-FEI*FVYGIKLIIICTV 449
           ++N+ +   Y D  + I F Y I LI++CTV
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 246 HLHQVKLHKRDNKHTFQRVWRDAQ 175
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 28  VFKNFKMKTLIFIMLVACVASXRTVLWYVVQ 120
           +FK FK +  +++++ AC+      LW V++
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGE---LWTVLR 458


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 183 RARHAGKCACCPACVTLLGEGAT 251
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 293 VCKEPLKCIKRVCTKL 340
           + K PL+C+ R CT +
Sbjct: 106 ITKAPLECMCRPCTSV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,496
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)