Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0126
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.61 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   5.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   5.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   10.0 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   10.0 

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 470 HQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 375
           HQ +  QQ+L+ HEQ+       Q     QQS
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217



 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 473 HHQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQS 375
           H Q +  Q   +  +Q+ Q H  H + +  QQS
Sbjct: 178 HMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQS 210


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 238 HPLTGRYSRTSGTC 279
           HP+TG   RT G C
Sbjct: 128 HPVTGCGERTEGRC 141


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 238 HPLTGRYSRTSGTC 279
           HP+TG   RT G C
Sbjct: 133 HPVTGCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 238 HPLTGRYSRTSGTC 279
           HP+TG   RT G C
Sbjct: 133 HPVTGCGERTEGRC 146


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 722  FTSLNVWEPYPFI 684
            FT  N W P PF+
Sbjct: 1158 FTPFNFWNPPPFM 1170


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 434 DPRGFAVKFYTDDGVWD 484
           D +GF +  YT++  WD
Sbjct: 202 DKKGFHMDGYTNNSKWD 218


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 796 LSTDKFLIPWLAYSGILPSTQ 734
           ++ DKF   W+  SGI+ +TQ
Sbjct: 131 IAIDKFDRLWILDSGIINNTQ 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,963
Number of Sequences: 438
Number of extensions: 6015
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)