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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0106
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.53 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.53 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.53 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.53 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.53 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.53 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHEDR-NSYRNDGERSCSRDRSRE 260


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHEDR-NSYRNDGERSCSRDRSRE 260


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHEDR-NSYRNDGERSCSRDRSRE 260


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHEDR-NSYRNDGERSCSRDRSRE 260


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHEDR-NSYRNDGERSCSRDRSRE 260


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHEDR-NSYRNDGERSCSRDRSRE 260


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR +  RH+ R    R  GER       R+
Sbjct: 226 RTSSCHSRYEDLRHEDR-NSYRNDGERSCSRDRSRE 260


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 560 RTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
           RT SC SR + +RH+      R  GER       R+
Sbjct: 226 RTSSCHSRYEDSRHE-DGNSYRNDGERSCSRDRSRE 260


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 351 RPGTGPHPLPVQTRHAPVLRANPYSEV 271
           + G  P PLP     A + + +PYS +
Sbjct: 647 KDGQSPFPLPPNLASANISQLDPYSSL 673


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 87  SEPYLPSIGFHGTRTLRQKRKLFPDLSA 4
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 287 ILIPKLRIQFATSLTYIILSTRG 219
           I+IP + I F T LT+ + S  G
Sbjct: 251 IIIPCMGISFLTVLTFYLPSDSG 273


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 287 ILIPKLRIQFATSLTYIILSTRG 219
           I+IP + I F T LT+ + S  G
Sbjct: 251 IIIPCMGISFLTVLTFYLPSDSG 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,847
Number of Sequences: 438
Number of extensions: 5479
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).