Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30063
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 115 FYSGDSYIVLNTTGDKDRLTWDIHF 189
           F  GD+ I +N    K+++ WD  F
Sbjct: 666 FQPGDTIICINIKRQKEKIEWDPGF 690


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +1

Query: 430 GKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERM 564
           G  N+ + + +   + L + DC +  ++ ++FV  G+ A  + ++
Sbjct: 61  GSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKL 105


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 638 PKRTMESSTGSSMP 679
           P ++ ESSTGSS+P
Sbjct: 355 PPKSSESSTGSSIP 368


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 404 VPSLIVTWLKPEACP 360
           V S I  W+KPEA P
Sbjct: 229 VMSWIAFWIKPEAIP 243


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
 Frame = +2

Query: 209 ARTKPARRPSSR*TWTTNNSRDQRY-STERSNITSPRSS*NISHQPSAI*KADTPQASAT 385
           +RTK  R    R  W     R+Q Y   +R  I         SH      K    + S T
Sbjct: 29  SRTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHE---KKLVLERSKT 85

Query: 386 *RSMREQRNDSSRSRVKETSALS 454
                E R+ S+ S   +T  LS
Sbjct: 86  KSKSPESRDRSNTSNTSKTFILS 108


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 250 LDDEQFQGSAVQHREVQYYESKEFL 324
           +D EQF     +   VQY  S++ L
Sbjct: 281 VDTEQFSNPQYEENNVQYEGSQDIL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,972
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)