Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30043X
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              76   1e-16
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.55 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              20   6.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    20   6.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 76.2 bits (179), Expect = 1e-16
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = -2

Query: 325 SALAPSTIKIKIIAPSERKDSVWIGGSILASLSTFQQMWIS 203
           +ALAPST+KIKIIAP E+K SVWIGGSILASLSTFQQMWIS
Sbjct: 93  TALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 29  DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT--RPRCLEALAVDDAGAGLVVFL 199
           D  +LD  F   T+ N + ++ R++ STT    G T  +   + AL +D        FL
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFL 412


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 283 PSERKDSVWIGGSILASLSTF 221
           P+E  + V +G SIL SL  F
Sbjct: 258 PAEAGEKVTLGISILLSLVVF 278


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 217 QMWISKEEYDESG 179
           ++ I+K+EYDE G
Sbjct: 42  EVHITKDEYDEIG 54


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 217 QMWISKEEYDESG 179
           ++ I+K+EYDE G
Sbjct: 42  EVHITKDEYDEIG 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,255
Number of Sequences: 438
Number of extensions: 1569
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)