Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30039X
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              72   3e-15
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.80 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   9.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 71.7 bits (168), Expect = 3e-15
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = -3

Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWIS 300
           ALAPS+ KIKIIAPP++K+SV IGGSILASLSTFQQMWIS
Sbjct: 94  ALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 126 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT--RPRCLEALAVDDAGAGLVGFL 296
           D  +LD  F   T+ N + ++ R++ STT    G T  +   + AL +D        FL
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFL 412


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGG 345
           A+A +     I++ PD     RIGG
Sbjct: 380 AVAAAVQSSSIVSSPDSARHQRIGG 404


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 253 HLRWTMPGPDSSDSSFEIHICWKVDREARMDPPIRTE 363
           H   TM   D +D    +    ++DR  RMD   RT+
Sbjct: 424 HTMDTMDTMDRTDKMSSMDRMDRMDRVDRMDTMDRTD 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,476
Number of Sequences: 438
Number of extensions: 1871
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)