BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0117 (691 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.1 DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 23 2.7 DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 23 2.7 DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 23 2.7 DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 23 2.7 DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 23 2.7 DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 23 2.7 DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 23 2.7 AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 2.7 AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 2.7 AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 2.7 AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 23 2.7 AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 2.7 AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 2.7 AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 2.7 AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 2.7 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 4.8 AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 8.4 >DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 391 Score = 23.4 bits (48), Expect = 2.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 257 QQALDYGTKVVGGVSPKKAGTEHL 328 Q DY + + V KKAG++HL Sbjct: 316 QSIWDYDSTYIPKVKNKKAGSKHL 339 >DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex determiner protein. Length = 152 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 82 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 117 >AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex determiner protein. Length = 385 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 315 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 350 >AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex determiner protein. Length = 401 Score = 23.0 bits (47), Expect = 2.7 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + VP ++G+ PP ++ RG+ P Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIMVRPWVPMRGQVP 366 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 22.2 bits (45), Expect = 4.8 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +3 Query: 60 RRFTFNNSTMAMPVRVLSKFKDGLKLG 140 R TF + P++ +S KDG LG Sbjct: 323 RPATFTCNVRGNPIKTVSWLKDGKPLG 349 >AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. Length = 400 Score = 21.4 bits (43), Expect = 8.4 Identities = 8/36 (22%), Positives = 18/36 (50%) Frame = -2 Query: 348 VPNTGLPRCSVPAFFGDTPPTTLVP*SRACWRGRYP 241 +P+ + + P ++G+ PP ++ RG+ P Sbjct: 330 IPSHYIEQIPAPVYYGNFPPRPIMVRPWVPMRGQVP 365 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 193,420 Number of Sequences: 438 Number of extensions: 3881 Number of successful extensions: 23 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 23 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 21073995 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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