Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0050
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.037
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 127 KKEVVDIPVKVIVEEIKPSLKSDLENVEVPDENEEI 234
           KKE+ DI  +V VEEI    K  L+N ++ D+N+++
Sbjct: 570 KKEIYDILPEVDVEEILGEAKV-LQNFDIKDKNKKV 604


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 83  WSMSSCSLDKFSTTFKGLSSASGTLSG 3
           W+M+  + D+++   KGLS    +++G
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 83  WSMSSCSLDKFSTTFKGLSSASGTLSG 3
           W+M+  + D+++   KGLS    +++G
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 83 WSMSSCSLDKFSTTFKGLSSASGTLSG 3
          W+M+  + D+++   KGLS    +++G
Sbjct: 17 WTMTMIAFDRYNVIVKGLSGKPLSING 43


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  EDKPLNVVENLSSEQELIDQANTIKDIDNSL 117
           E  P+ ++ENL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 463 HFQENFGAQIQKLNETLHFIKPADTIAAPSVKETQNKAS 579
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 20  HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 58


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 463 HFQENFGAQIQKLNETLHFIKPADTIAAPSVKETQNKAS 579
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 110 HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 148


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 196 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 300
           +E  E  DE + I+ P+V   +  PP  +  ET +
Sbjct: 171 VEENETYDEFDTIRIPIVRSLSKSPPNDEGIETDS 205


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +2

Query: 338 PSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 451
           P  + +  R++L +   ++C+ +LE+  +  + L +S+
Sbjct: 451 PLDLAIPVRETLILPPRKRCKMILESMEIERNGLIASQ 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.127    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,954
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)