Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0080
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.64 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.64 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.64 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.64 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 108 EVVAVVHRDLDLVQLAGLQPRQDHEVVLGDVVG 10
           E VAV+H+DL +  + GL+  +     +G  VG
Sbjct: 124 EAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVG 156


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 108 EVVAVVHRDLDLVQLAGLQPRQDHEVVLGDVVG 10
           E VAV+H+DL +  + GL+  +     +G  VG
Sbjct: 124 EAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVG 156


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 108 EVVAVVHRDLDLVQLAGLQPRQDHEVVLGDVVG 10
           E VAV+H+DL +  + GL+  +     +G  VG
Sbjct: 124 EAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVG 156


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 189 ARGRDLLVRLHYRSVYGGVDRPQLAGAEVVAVVHRDLDLVQLAGLQP 49
           AR   LLV LH  S+Y G    ++AG     V+  D   + L GL P
Sbjct: 21  ARMLALLVSLHRLSIYSGGSDWRVAGRSESVVIPGD---IVLGGLFP 64


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 476 KEPSSFMPAVSPSPYSAIESVSLSGP 399
           ++PSS  P   PSP+ + ++     P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSP 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,071
Number of Sequences: 438
Number of extensions: 2488
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)