Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0050
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.81 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.81 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 384 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSFSGRVN 244
           ++ T+F+K    + N     +++GG    L   R C  ++ F+ ++N
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKIN 506


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 384 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSFSGRVN 244
           ++ T+F+K    + N     +++GG    L   R C  ++ F+ ++N
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKIN 506


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 369 FNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHK 265
           +NK ++P+QN T + H   G    L  ++L N+++
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG----LAFVQLINVNE 68


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 214 GATIMKLLDIIHPAAKTLVDIAKSQ 288
           G   +KLL+IIH   K ++ + K +
Sbjct: 241 GKNQIKLLEIIHGLTKKVIQLKKEE 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,806
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)