Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0143
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -2

Query: 311 AKQ*KCIQHLLSN------LNKGFI*RKARNYFNSIKHSILN 204
           AK+ + + HLL++      L++G+I  K     N I H ILN
Sbjct: 755 AKKARSVNHLLTHHEYDYELSRGYIDEKILENQNIITHMILN 796


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 173 TYVFHTNLDIITVNIIEKSNMH 108
           T+VF   L+   VN   +S+MH
Sbjct: 313 TFVFGALLEFALVNYASRSDMH 334


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 173 TYVFHTNLDIITVNIIEKSNMH 108
           T+VF   L+   VN   +S+MH
Sbjct: 313 TFVFGALLEFALVNYASRSDMH 334


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 128 IEKSNMH*CDGLH 90
           IEK N+H  D LH
Sbjct: 48  IEKQNLHESDDLH 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,895
Number of Sequences: 438
Number of extensions: 3272
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)