Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0120
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.54 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 590 PVQTPARPKRGTRGEPPLGRPP 525
           P Q+P  P+RG+   P  G PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPP 48


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 529 HLKIGDISPTCSISPAHSKPKMKGVFGGESMAP*RTIKSWKF 404
           HLKI D   TC +   H  P + G   G  MA   T  S+ +
Sbjct: 322 HLKIHD---TCGVHNLHGMPGILGGIFGALMAALATEASYDY 360


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 483 AGEIEQVGEMSPILR-WATKWWLSPST 560
           +G I  V E  P    W T+W + PST
Sbjct: 565 SGSINTVAEWEPPRALWPTEWKVRPST 591


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 SLRPKLPRFDSSSGRHRLSTEDSFHLGL 475
           S+RPK P  D+ +G   LSTE    L L
Sbjct: 208 SVRPKFPSMDNING---LSTESKADLPL 232


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 84  RRPNSCSPGDPLVLERPPPR 25
           R P    PGD  + +RP PR
Sbjct: 914 RSPGRAWPGDSDIRQRPIPR 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,292
Number of Sequences: 438
Number of extensions: 4621
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)