Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0116
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 548 TAFLENRSVVLRFWPSPASRILNPPMDKRQRNFVFK 441
           T   + R +  R W +  S+I N     ++RN  FK
Sbjct: 342 TICCKTRIIGRRSWVTRESQICNNSSSDKERNSSFK 377


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 18  LESHDRQCTKVILIL 62
           +ESH+ +CT V L++
Sbjct: 694 MESHEVRCTAVFLLM 708


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 306 EY*SRLKSPITNQSPFCLT*YLAAYDLRSDMSF 208
           +Y   +KSP     P C+   L    L +D SF
Sbjct: 320 QYIRHIKSPYHTPEPDCIHELLGHMPLLADPSF 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 543 RCYLSEGR*ILSPIPRRGYKKVAHSGSTRACSDHT 647
           R  L  G  +L P P   +++  HS + R  + ++
Sbjct: 79  RRVLRNGTLVLLPFPAAAFRQDVHSAAYRCVASNS 113


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 543 RCYLSEGR*ILSPIPRRGYKKVAHSGSTRACSDHT 647
           R  L  G  +L P P   +++  HS + R  + ++
Sbjct: 79  RRVLRNGTLVLLPFPAAAFRQDVHSAAYRCVASNS 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,878
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)