Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0064
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    32   0.005
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    32   0.005
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              31   0.012
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.066
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.20 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 327 PGTTIELTCEAAGSPAPSVHW 389
           PG  + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455



 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 306 LPSYAHTPGTTIELTCEAAGSPAPSVHW 389
           +P      G T+ L C  AG P   + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 339 IELTCEAAGSPAPSVHWFKNDSS 407
           + L C+A G P P++ W K   S
Sbjct: 727 VALHCQAQGVPTPTIVWKKATGS 749



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +3

Query: 264 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 401
           S G H + +  +GP  S+   P + +E        L C A GSP  ++ W   D
Sbjct: 17  SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHWFK 395
           G T  L CE  G    +V W K
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 327 PGTTIELTCEAAGSPAPSVHW 389
           PG  + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455



 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 306 LPSYAHTPGTTIELTCEAAGSPAPSVHW 389
           +P      G T+ L C  AG P   + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 339 IELTCEAAGSPAPSVHWFKNDSS 407
           + L C+A G P P++ W K   S
Sbjct: 723 VALHCQAQGVPTPTIVWKKATGS 745



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +3

Query: 264 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 401
           S G H + +  +GP  S+   P + +E        L C A GSP  ++ W   D
Sbjct: 17  SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHWFK 395
           G T  L CE  G    +V W K
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLK 839


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 345 LTCEAAGSPAPSVHWFKNDSSV 410
           + C  AG P P V W KND ++
Sbjct: 421 IRCHVAGEPLPRVQWLKNDEAL 442


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHWFKNDSS 407
           GT   + C+A G+P P + W + D S
Sbjct: 18  GTGAVVECQARGNPQPDIIWVRADGS 43



 Score = 27.9 bits (59), Expect = 0.088
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 327 PGTTIELTCEAAGSPAPSVHW 389
           PG ++ L C A+G+P P + W
Sbjct: 407 PGPSMFLKCVASGNPTPEITW 427



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 339  IELTCEAAGSPAPSVHW 389
            ++L C A G PAP V W
Sbjct: 1294 VKLPCLAVGVPAPEVTW 1310



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 318 AHTPGTTIELTCEAAGSPAPSVHWFK 395
           A   G+   + C+A G P P V W K
Sbjct: 689 AFAQGSDARVECKADGFPKPQVTWKK 714



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHWFKN 398
           G     TC   G+P  +V W K+
Sbjct: 322 GRPATFTCNVRGNPIKTVSWLKD 344



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 339 IELTCEAAGSPAPSVHWFK 395
           + L C A G P P   W+K
Sbjct: 230 LPLLCPAQGFPVPVHRWYK 248



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 582 CIVDHSVGSRSLE 544
           CIV++SVG  S+E
Sbjct: 287 CIVNNSVGGESVE 299


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 330 GTTIELTCEAAGSPAPSVHWFKNDSSVY 413
           G  I   C A G P P + W K+   +Y
Sbjct: 37  GRKITFFCMATGFPRPEITWLKDGIELY 64


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 576 QYKIALLSSRNALSCSAEPPS 638
           +Y+ AL +   +L+C+AEP S
Sbjct: 337 KYRAALFAKFPSLACAAEPSS 357


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 110 DSRRKNSFFAKSIRNSLRFSENRIKSSI 27
           + +++ +F    +RN L   EN+ KS++
Sbjct: 89  NDKKEENFIVDRLRNDLFECENKEKSNV 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,088
Number of Sequences: 438
Number of extensions: 3084
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)