Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0090
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   7.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 285 DKQTYWQKTPFRAVAENGI-QLKLVNSKTGPGK 380
           D   YW++TP R V E  + Q  ++  +T   K
Sbjct: 188 DVVMYWKETPVRGVEEAELPQFTIIGYETNDRK 220


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 118  CRP*TRTLVWRSDSTASAESTTRGPSSSTQR 210
            CR   RT V R    +S + + RGPS+S  R
Sbjct: 1333 CRNSRRTPVPRLAQDSSEDESYRGPSASGGR 1363


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 494  PPPPQDRSHQTEDVREQPP 550
            P   + R H  E V EQPP
Sbjct: 1067 PMSEERRQHTAEGVPEQPP 1085


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 426 VTLLWKDPRNVGWREQTAYR 485
           V L W  P  +G R  T YR
Sbjct: 334 VFLSWNAPHMLGGRTDTTYR 353


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 276 WKKDKQTYWQKTPFRAVAENGIQLKLVNSKTGPGKI 383
           W K + T  ++ P R   +  +     N+K GP +I
Sbjct: 8   WHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRI 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,846
Number of Sequences: 438
Number of extensions: 5135
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)