Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0088
(694 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 2.8
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 2.8
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 2.8
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 23 2.8
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 23 3.6
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 6.4
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 6.4
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 6.4
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 6.4
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 22 6.4
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 6.4
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 8.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 8.4
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 310 HRLCLTLRSNIFLGGNRNYKSIICN 384
H++ +L SN + N NYK + CN
Sbjct: 79 HKIISSL-SNNYNYNNNNYKKLYCN 102
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 310 HRLCLTLRSNIFLGGNRNYKSIICN 384
H++ +L SN + N NYK + CN
Sbjct: 79 HKIISSL-SNNYNYNNNNYKKLYCN 102
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 310 HRLCLTLRSNIFLGGNRNYKSIICN 384
H++ +L SN + N NYK + CN
Sbjct: 79 HKIISSL-SNNYNYNNNNYKKLYCN 102
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 167 FELFNHSLHFGKYNLLYKKLFQYLLCNI 84
++ N++ + YN YKKL Y + NI
Sbjct: 89 YKYSNYNNYNNNYNTNYKKLQYYNIINI 116
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 155 NHSLHFGKYNLLYKKLFQYLLCNI 84
N++ + YN YKKL Y + NI
Sbjct: 97 NYNNYNNNYNTNYKKLQYYNIINI 120
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 256 ICMINWNYNFIYTNSNCFHRLCLTL 330
I ++ NYN+ N+N + +LC +
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNI 106
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 256 ICMINWNYNFIYTNSNCFHRLCLTL 330
I ++ NYN+ N+N + +LC +
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNI 106
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 256 ICMINWNYNFIYTNSNCFHRLCLTL 330
I ++ NYN+ N+N + +LC +
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNI 106
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 256 ICMINWNYNFIYTNSNCFHRLCLTL 330
I ++ NYN+ N+N + +LC +
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNI 106
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 256 ICMINWNYNFIYTNSNCFHRLCLTL 330
I ++ NYN+ N+N + +LC +
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNI 106
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 256 ICMINWNYNFIYTNSNCFHRLCLTL 330
I ++ NYN+ N+N + +LC +
Sbjct: 82 ISSLSNNYNYSNYNNNNYKQLCYNI 106
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 576 LSKFLFNPKGLLDPVW 529
L + F+ +GLL PVW
Sbjct: 213 LEELGFDTEGLLPPVW 228
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +2
Query: 80 TIYYTANIEIAFYRVNYICRNVNY 151
T++YT N+ + ++++C V Y
Sbjct: 233 TLFYTVNLILPTVLISFLCVLVFY 256
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,846
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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