Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0058
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 326 LRLEALKMAISYVMTTYNVNL 388
           LRL+A +  ++Y   TY +N+
Sbjct: 487 LRLKARRACMNYERFTYKINI 507


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 326 LRLEALKMAISYVMTTYNVNL 388
           LRL+A +  ++Y   TY +N+
Sbjct: 487 LRLKARRACMNYERFTYKINI 507


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 533 LAFPVLWQLFLFLILP 486
           + FP+L+ LF+ L  P
Sbjct: 368 IGFPILFMLFIILYWP 383


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 112 KYAKFTVNDEN 80
           +Y K+T+NDE+
Sbjct: 233 RYTKYTINDES 243


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +2

Query: 545  KNYKTNSIKESIRRGHDDL---GDHYLDCGDLTSALKCY 652
            K Y  + I+    + +D L   G H+  CGD T A   Y
Sbjct: 1044 KTYVQDLIQAEASQIYDMLVYEGGHFYVCGDCTMAEDVY 1082


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,583
Number of Sequences: 438
Number of extensions: 4487
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)