Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0274
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.0  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 110 LWLNSAREQIKSENPGLRV 166
           +W  + R + K +NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 291 RWWRRGRKEGSKTREKG 341
           RWW R R+    T + G
Sbjct: 44  RWWSRPREPAQTTSKAG 60


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 185 GGEIWKSMKDKTEWE 229
           GGE+W  ++DK  ++
Sbjct: 450 GGELWTVLRDKGHFD 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,111
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)