Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0261
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.62 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.62 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.4  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 107 FVVCCMLVLVSEMLIW 154
           ++ CCMLV+VS +  W
Sbjct: 249 YIPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 107 FVVCCMLVLVSEMLIW 154
           ++ CCMLV+VS +  W
Sbjct: 249 YIPCCMLVIVSWVSFW 264


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 610 DQECYYMVRLTIKLXKGLPTLXXXH 536
           D+   YMV+LT+KL   +  L   H
Sbjct: 148 DKTILYMVKLTLKLSCAMNFLIYPH 172


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 137 SEMLIWRIDLSVK 175
           ++M+IW +D S+K
Sbjct: 18  NQMMIWALDCSIK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,416
Number of Sequences: 438
Number of extensions: 2395
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)