Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0092
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    52   4e-09
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.39 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              24   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 52.4 bits (120), Expect = 4e-09
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
 Frame = +2

Query: 32  FKNMPGLMYLNVAGNNL-SD-MDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATL 205
           F  +  L+ LN+AGN L SD +D  TF             N +  +   +F +   L  L
Sbjct: 305 FTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364

Query: 206 HLLKNPIDTVYG---LQISDLLTLNAGQTNIKFVGPSMFNGMGLIANLNLSGNSIEKIHN 376
            L  N ID +     L + +L TL      ++ VG  +FNG+ ++  L LSGN+I  I  
Sbjct: 365 DLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDP 424

Query: 377 QAF 385
            AF
Sbjct: 425 LAF 427



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
 Frame = +2

Query: 8   MQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSEN 187
           ++ + A  F  +  L  L ++GN ++ +DP  F             N + S+PD +  + 
Sbjct: 395 LRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDAL-RDL 453

Query: 188 TELATLHLLKNPIDTVYG---LQISDLLTLNAGQTNIKFVGPSMFNGMGLIANLNLSGNS 358
             L TL L +N I   Y      +  L  L     +I  +   M   +  +  LNL+ N 
Sbjct: 454 ALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNK 513

Query: 359 IEKIHNQAFHK 391
           ++ +   AF +
Sbjct: 514 VQHVERYAFER 524



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 5/180 (2%)
 Frame = +2

Query: 146 NHIKSLPDDIFSENTELATLHLLKNPI-DTVYGL--QISDLLTLN-AG-QTNIKFVGPSM 310
           N + SLP+ +F+   +L  +HL  N + D   G+  ++  LL LN AG +     V  + 
Sbjct: 271 NSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETT 330

Query: 311 FNGMGLIANLNLSGNSIEKIHNQAFHKLVEXXXXXXXXXXXXXMSSILIKENIELDIFKI 490
           F G+  +  LNLS N +  I  + F  L               + S        L   ++
Sbjct: 331 FLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLEL 390

Query: 491 SNNPRLKHLPVEGFTCSSDQFNIYFFGASDCGLEEIYDNSLKTFSALSIIHLSNNKLTTI 670
           S+N +L+ +  + F   +  F +     S   +  I   + +  S L  + LS N+LT++
Sbjct: 391 SDN-KLRTVGAQLF---NGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV 446



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 584 GLEEIYDNSLKTFSALSIIHLSNNKLTTINNTVF 685
           G+E I + +    + L I+HL +N++  +    F
Sbjct: 829 GIESIQNRTFNGLNNLQILHLEDNRIRELKGFEF 862


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 391 FVECLVMDFLDTISAEVEISNKTHTVEH*WPNKLNVCLSRIK 266
           +V   ++DFL+ + A      +    +H WP+ L    SR++
Sbjct: 184 YVRSKLVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRVR 225


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 524 EGFTCSSDQFNIYFFGASDCGLEEIYDNSL 613
           E F C    F   F G   CG+ E   NS+
Sbjct: 28  ERFRCPEALFQPSFLGMEACGIHETTYNSI 57


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 500 PRLKHLPVEGFTCSSDQFNIYFFGA 574
           P+ KH+ +E +T  S     Y +GA
Sbjct: 278 PQPKHMLIEAYTNLSMTMKYYDYGA 302


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 653 YSIDELLTEQRMFSENYRKSLLDHSQMRQR 564
           Y  +  L  +    E YR+ LL+H + R R
Sbjct: 131 YPTNRSLFIREQTEEMYREMLLEHKKRRAR 160


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 500 PRLKHLPVEGFTCSSDQFNIYFFGA 574
           P+ KH+ +E +T  S     Y +GA
Sbjct: 278 PQPKHMLIEAYTNLSMTMKYYDYGA 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,677
Number of Sequences: 438
Number of extensions: 3372
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)