Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0083
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.36 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 361 NRHSEYYKIIFTKVSQQFTRIRIIGNDI 278
           NR S +Y   F  + Q  T +R+IGNDI
Sbjct: 464 NRISNFYNGSFRNLDQ-LTGLRLIGNDI 490


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 318  HNNSHALGSSAMIFIVTRKKCKIVQNWTDNSSH 220
            H N+ + G   MI+ V   K K  Q W   S++
Sbjct: 1480 HLNAWSDGGCPMIYFVVEHKKKNQQEWNQVSNN 1512


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 2   RRRTPEFNDVTK 37
           RRRTP +N V+K
Sbjct: 411 RRRTPRYNSVSK 422


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 391 FWESIG-SVQLNRHSEYYKIIFTKVSQQFTRIRIIGNDIYCNTQKMQNRTK 242
           +W S   S  LN  +  + +I T+   + +   I+G D+  N++  ++RTK
Sbjct: 348 YWISTTTSFVLNNRAGRF-LILTESDTKLSSQGILGEDVENNSEVSKSRTK 397


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 364 LNRHSEYYKIIFTKVSQQFTRIRIIGNDIYCNTQKMQNRTKLDGQLKSQ 218
           L+ H ++Y I  T V   FT+ + +  D   N Q + N  KLD  +  Q
Sbjct: 4   LHIHYQHYHI--TPV---FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQ 47


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 272 TINIIADDPNACELL 316
           T NIIADDP     L
Sbjct: 301 TANIIADDPEGVSCL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,259
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)