Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060160.seq
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    28   0.092
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.0  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 0.092
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 312 ISKIPLQPNVYKTTFFYLTIKRNENAVMTRLI 217
           +S  P+  N Y+T FF+    R E AV TR++
Sbjct: 261 MSLSPIAVNGYRTLFFHPLSSRREFAVSTRIL 292


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 357 FYFYLTITQYEDTKKISKIPLQPNVYKTTFFYLTIKRNEN 238
           FY+ LT    +  K +  + L   +    FFY    +N N
Sbjct: 283 FYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPN 322


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 374 KLFYIPFIFI*PLLNTKTQKKLAKFRSNRMSIRR 273
           K+  + F  I  L+N K Q  ++KF  +R  +++
Sbjct: 2   KIKILLFFTILALINVKAQDDISKFLKDRPYVQK 35


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 369 ILYTFYFYLTITQYEDTKKISKIPLQPNVYK 277
           +L   YF     +YE+   ++ +PL  NV K
Sbjct: 78  VLNVLYFINKNDKYEENTILTTMPLLINVVK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,170
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)