Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C04
         (998 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.15 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 428 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 312
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 470 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 351
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 667 LADTMVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWM 548
           L D+  P +P   PP      PDS  +  I  +    N M
Sbjct: 332 LGDSDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAM 371


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 222 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 323
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 232 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 131
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,484
Number of Sequences: 438
Number of extensions: 6165
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)