BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B02
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   1.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.5  
AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced prot...    21   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   9.6  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 55  ENEFSKTKSIFCTSNY*YKN 114
           E E SK   I  ++NY YKN
Sbjct: 294 ERERSKETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 55  ENEFSKTKSIFCTSNY*YKN 114
           E E SK   I  ++NY YKN
Sbjct: 305 ERERSKETKIISSNNYNYKN 324


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 376 LCSL-LLQFSPFGLVAVEGVFATPELVT 296
           +C L +L ++P+G++++ G F    L+T
Sbjct: 279 ICFLYVLSWTPYGVMSMIGAFGNKALLT 306


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 327 STATRPNGLNWRRSEHNTYHSSPSNY 404
           S  T  N  N+  + +N Y+ + +NY
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYNNNNY 111


>AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 21

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 245 DQLPDLKPHLDKEINFHS 298
           D+LP LK  L+  +N+H+
Sbjct: 3   DELPILKGILNGVVNYHN 20


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 233 YKSILLLWQPP 201
           Y S L++WQPP
Sbjct: 136 YYSGLVVWQPP 146


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 351 LNWRRSEHN 377
           LN+R+SEHN
Sbjct: 403 LNFRKSEHN 411


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 354 NWRRSEHNTYHSSPSNY 404
           N++ S +N Y+++ +NY
Sbjct: 321 NYKYSNYNNYNNNYNNY 337


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 351 LNWRRSEHN 377
           LN+R+SEHN
Sbjct: 493 LNFRKSEHN 501


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 363 RSEHNTYHSSPSNY 404
           R  H+T H S  NY
Sbjct: 194 RQRHSTIHLSTGNY 207


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 AKTPSTATRPNGLNWRRSEHNTYHSSPSNYKVS 413
           +K P   +  N L+   + +N Y++  +NY  +
Sbjct: 76  SKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,607
Number of Sequences: 438
Number of extensions: 1661
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)