Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C06
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.93 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   5.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 381 NRHYRTLPLWRNGWPRT 431
           N+ + T+P WRNG P T
Sbjct: 77  NKLFVTVPRWRNGIPAT 93


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 269 GSAGTAVVTSSQALVWTDGRYYTQFEREVDLS 364
           G+   AV+TS Q  V  DG Y   FE    +S
Sbjct: 22  GADKDAVITSQQLEVNFDGNYINNFETSNGIS 53


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 396 TLPLWRNGWPRTSKTV 443
           TLP W++G P T  TV
Sbjct: 202 TLPKWKDGIPVTLTTV 217


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 434 KDGDVVGVDPQTM 472
           K+ DVV VDP+ M
Sbjct: 78  KEADVVAVDPEDM 90


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 434 KDGDVVGVDPQTM 472
           K+ DVV VDP+ M
Sbjct: 78  KEADVVAVDPEDM 90


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 434 KDGDVVGVDPQTM 472
           K+ DVV VDP+ M
Sbjct: 78  KEADVVAVDPEDM 90


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 353 VDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 460
           +D +    + Q LP      +W   N +DG ++GV+
Sbjct: 498 IDFAKTLPLPQHLPRIHHDAEWKVGNHEDGYLIGVN 533


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 353 VDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 460
           +D +    + Q LP      +W   N +DG ++GV+
Sbjct: 413 IDFAKTLPLPQHLPRIHHDAEWKVGNHEDGYLIGVN 448


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 353 VDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 460
           +D +    + Q LP      +W   N +DG ++GV+
Sbjct: 732 IDFAKTLPLPQHLPRIHHDAEWKVGNHEDGYLIGVN 767


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,693
Number of Sequences: 438
Number of extensions: 5444
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)