Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40116
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    60   2e-09
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    59   3e-09
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.55 

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = +2

Query: 29  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGV 136
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T G+
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 57


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +2

Query: 32  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGV 136
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T G+
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 44  KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 133
           KNHT H++ R ++  G K  RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,583
Number of Sequences: 28952
Number of extensions: 267490
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)