Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40005
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo...    55   4e-08
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo...    55   4e-08
At3g25790.1 68416.m03210 myb family transcription factor contain...    29   4.1  
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative  (...    28   7.1  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    27   9.4  

>At4g33150.2 68417.m04723 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 27/90 (30%), Positives = 42/90 (46%)
 Frame = +1

Query: 385 MLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLP 564
           ++ ICDI+ D GGSIEF+N  T ID+PF  ++   N           LC+       +  
Sbjct: 344 LVGICDITCDIGGSIEFVNRATLIDSPFFRFNPSNNSYYDDMDGDGVLCMAVDILPTEFA 403

Query: 565 RESTDFFGDLLYPYAEDIMKSDATKPLEEH 654
           +E++  FGD+L  +   +        L  H
Sbjct: 404 KEASQHFGDILSGFVGSLASMTEISDLPAH 433


>At4g33150.1 68417.m04722 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 27/90 (30%), Positives = 42/90 (46%)
 Frame = +1

Query: 385 MLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLP 564
           ++ ICDI+ D GGSIEF+N  T ID+PF  ++   N           LC+       +  
Sbjct: 344 LVGICDITCDIGGSIEFVNRATLIDSPFFRFNPSNNSYYDDMDGDGVLCMAVDILPTEFA 403

Query: 565 RESTDFFGDLLYPYAEDIMKSDATKPLEEH 654
           +E++  FGD+L  +   +        L  H
Sbjct: 404 KEASQHFGDILSGFVGSLASMTEISDLPAH 433


>At3g25790.1 68416.m03210 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 357

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 589 PRRNRSTHEAVEVGMLSMEHTSTPGPLNSSYPCFCQRHTN 470
           P+ N ST  AV   + S E T   GP+ SS P    RH+N
Sbjct: 279 PQTNHSTANAVNA-VASGETTGIYGPMVSSLPSEWPRHSN 317


>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
           (AMP1) identical to GI:15624092 glutamate
           carboxypeptidase {Arabidopsis thaliana}; ileal
           peptidase, Rattus norvegicus, EMBL:AF009921; identical
           to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF04253: Transferrin receptor-like dimerisation domain
           and PF02225 PA domain
          Length = 705

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 264 ASIGQLTVRNYSRYLMRTPHHAGTYPVVTEEH 359
           +S    T+ +Y R L R PH AGT P +   H
Sbjct: 70  SSASNATISSYLRELTRHPHLAGTKPSLDTLH 101


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 491 FLSASYKQKGVSIVVHSFMNSIEP-PGSADMSQIASILCGNAGAPMLFGN--HGVCAGM 324
           F SA  +  G    ++S ++ + P   S   S +ASI  GNAG P++     +G  +GM
Sbjct: 226 FFSAGARASGA---LNSSLDILSPFDASGHGSHVASIAAGNAGVPVIVDGFFYGRASGM 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,795
Number of Sequences: 28952
Number of extensions: 333053
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)