Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30102
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             29   2.4  
At4g01870.1 68417.m00245 tolB protein-related contains weak simi...    28   7.4  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 50  ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 142
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At4g01870.1 68417.m00245 tolB protein-related contains weak
           similarity to TolB protein precursor (Swiss-Prot:P44677)
           [Haemophilus influenzae]
          Length = 652

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
 Frame = +3

Query: 489 HSPF*Y*VNPDGFSFGYETDNGISAQSSGSLKKVDNI-------DVLAIQGQYEYSAPDG 647
           ++PF   V+PD    GY    G S Q    +  +++I        +L I G +  S+P+G
Sbjct: 295 YNPF---VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNG 351

Query: 648 TPVKFTYTADENG 686
             +      D NG
Sbjct: 352 DLIALNSDFDING 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,030
Number of Sequences: 28952
Number of extensions: 295873
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)