Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30099
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04630.1 68414.m00458 expressed protein                             38   0.005
At2g33220.1 68415.m04070 expressed protein                             37   0.008
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa...    27   6.8  
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    27   6.8  
At3g01810.1 68416.m00123 expressed protein                             27   9.0  

>At1g04630.1 68414.m00458 expressed protein
          Length = 143

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2   MAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYK-- 175
           MA    +   QD PPPGG+ P+ + R  + +  S   MF    G     +Y      K  
Sbjct: 12  MASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWGMYQVGQGNKIR 71

Query: 176 RILKDEIEMRSAKMAIYPALLAERD 250
           R LK+  E  +A+  I P L AE D
Sbjct: 72  RALKE--EKYAARRTILPILQAEED 94



 Score = 31.5 bits (68), Expect = 0.42
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +1

Query: 256 YLKQLRRNRDAEAELMRDVPGWEVG 330
           ++ + ++  + EA++M+DVPGW+VG
Sbjct: 97  FVSEWKKYLEYEADVMKDVPGWKVG 121


>At2g33220.1 68415.m04070 expressed protein
          Length = 143

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 2   MAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYK-- 175
           MA    +   QD PPPGG+ P+ + R  + +  S   +F    G     +Y      K  
Sbjct: 12  MASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWGMYQVGQGNKIR 71

Query: 176 RILKDEIEMRSAKMAIYPALLAERD 250
           R LK+  E  +A+ AI P L AE D
Sbjct: 72  RALKE--EKYAARRAILPILQAEED 94



 Score = 31.5 bits (68), Expect = 0.42
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +1

Query: 256 YLKQLRRNRDAEAELMRDVPGWEVG 330
           ++ + ++  + EA++M+DVPGW+VG
Sbjct: 97  FVSEWKKYLEYEADVMKDVPGWKVG 121


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 298 ALPQHPCSYGAALDIPISFCQ*SRVYRHFSGSHLNLILKNSLVSYVIEIYRTNCHSNEPS 119
           A  Q+  + G+ L +  SF + S  + HFSG+  ++ +K+   S     Y  N  S  PS
Sbjct: 10  ARTQNIVTIGSLLQLRSSFPRLSSQF-HFSGTLNSIPIKHLSTSAAANDYHQNPQSGSPS 68

Query: 118 KH 113
           +H
Sbjct: 69  QH 70


>At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 225

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 214 FSGSHLNLILKNSLVSYVIEIYRTN 140
           F GSH++ +LK+ LVS + E  R N
Sbjct: 25  FIGSHVSRLLKSDLVSVLAEFQRQN 49


>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 401

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 335 TTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNV 439
           TT++ S   FPP S S+ +  ++MH   S + T V
Sbjct: 51  TTQHRSPTRFPPPSSSSSTPSASMHADNSPTPTIV 85


>At2g31900.1 68415.m03897 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF01843
           DIL domain, PF00612 IQ calmodulin-binding motif, PF02736
           myosin N-terminal SH3-like domain
          Length = 1556

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 363 NKFVDAFSVVSTDLPSGNVSHQLCLSI 283
           ++F+D F +++TD+P G+     C SI
Sbjct: 674 DEFLDRFVMLATDVPEGSDEKSACASI 700


>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   WLKLFRWLKNKICPLRGATSQFHLKGSPLNLI 98
           W K FR    ++CPLRG+  +      P  LI
Sbjct: 632 WKKAFREAHERLCPLRGSGHECGCLPIPARLI 663


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,346,162
Number of Sequences: 28952
Number of extensions: 230871
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)