Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30097
(358 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16030.1 68414.m01924 heat shock protein 70, putative / HSP70... 63 5e-11
At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein, puta... 62 1e-10
At3g09440.1 68416.m01121 heat shock cognate 70 kDa protein 3 (HS... 61 2e-10
At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1 (HS... 60 3e-10
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 60 4e-10
At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2 (HS... 60 6e-10
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)... 52 9e-08
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)... 52 9e-08
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)... 52 9e-08
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 41 2e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 0.23
At3g56850.1 68416.m06322 ABA-responsive element-binding protein ... 28 2.1
At2g01270.1 68415.m00040 thioredoxin family protein low similari... 27 2.8
At2g41070.3 68415.m05073 basic leucine zipper transcription fact... 27 3.7
At2g41070.2 68415.m05072 basic leucine zipper transcription fact... 27 3.7
At2g41070.1 68415.m05071 basic leucine zipper transcription fact... 27 3.7
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 27 4.9
At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /... 27 4.9
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 4.9
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 26 6.4
At5g01570.1 68418.m00072 hypothetical protein hypothetical prote... 26 6.4
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 26 6.4
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 26 6.4
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 26 6.4
At1g70250.1 68414.m08082 receptor serine/threonine kinase, putat... 26 6.4
At1g61080.1 68414.m06877 proline-rich family protein 26 6.4
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 26 8.5
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 26 8.5
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 26 8.5
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 26 8.5
At3g16565.1 68416.m02118 alanyl-tRNA synthetase-related low simi... 26 8.5
At2g37870.1 68415.m04649 protease inhibitor/seed storage/lipid t... 26 8.5
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 26 8.5
>At1g16030.1 68414.m01924 heat shock protein 70, putative / HSP70,
putative similar to heat shock protein hsp70 GI:1771478
from [Pisum sativum]
Length = 646
Score = 63.3 bits (147), Expect = 5e-11
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DKQ I + TI+W++ NQLA+ +E+E+K KELEGI NPII+KMYQ
Sbjct: 571 DKQKIEKAIDETIEWIEGNQLAEVDEFEYKLKELEGICNPIISKMYQ 617
>At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein,
putative / HSC70, putative / HSP70, putative strong
similarity to heat shock cognate 70 kd protein 1
SP:P22953 [Arabidopsis thaliana (Mouse-ear cress)]
Length = 617
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ D I+WLD NQLA+ +E+EHK KELE +++ IITKMYQ
Sbjct: 570 DKKKFEDSIEEVIQWLDDNQLAEADEFEHKMKELESVWSTIITKMYQ 616
>At3g09440.1 68416.m01121 heat shock cognate 70 kDa protein 3
(HSC70-3) (HSP70-3) identical to SP|O65719 Heat shock
cognate 70 kDa protein 3 (Hsc70.3) {Arabidopsis
thaliana}
Length = 649
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ I D I+WL++NQLA+ +E+E K KELE I NPII KMYQ
Sbjct: 572 DKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQ 618
>At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1
(HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}
Length = 651
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ I D I+WL+ NQLA+ +E+E K KELE I NPII KMYQ
Sbjct: 572 DKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQ 618
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ I D + I+WLD NQLA+ +E+E K KELE + NPII +MYQ
Sbjct: 572 DKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKELESLCNPIIARMYQ 618
>At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2
(HSC70-2) (HSP70-2) identical to SP|P22954 Heat shock
cognate 70 kDa protein 2 (Hsc70.2) {Arabidopsis
thaliana}
Length = 653
Score = 59.7 bits (138), Expect = 6e-10
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ + D I+WLD NQL + +E+E K KELE + NPII KMYQ
Sbjct: 572 DKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQ 618
>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 613
Score = 52.4 bits (120), Expect = 9e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
+K+ I ++WLD NQ ++KEEY+ K KE+E + NPIIT +YQ
Sbjct: 543 EKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQ 589
>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 668
Score = 52.4 bits (120), Expect = 9e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
+K+ I ++WLD NQ ++KEEY+ K KE+E + NPIIT +YQ
Sbjct: 598 EKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQ 644
>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
SWISS-PROT:Q9LKR3 PMID:8888624
Length = 669
Score = 52.4 bits (120), Expect = 9e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
+K+ I ++WLD NQ ++KEEY+ K KE+E + NPIIT +YQ
Sbjct: 598 EKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQ 644
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ + ++WL+ N A+KE+Y+ K KE+E + +P+I +Y+
Sbjct: 612 DKEKMEGVLKEALEWLEENVNAEKEDYDEKLKEVELVCDPVIKSVYE 658
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 137 TRVPEESPEVCRASRAEHPEPEVPPPG-LEALAPPSR 244
+R P S + SR P P +PPP L PP+R
Sbjct: 521 SRAPSSSAKRASGSRGRRPRPPLPPPARARPLPPPAR 557
>At3g56850.1 68416.m06322 ABA-responsive element-binding protein 3
(AREB3) identical to ABA-responsive element binding
protein 3 (AREB3) [Arabidopsis thaliana] GI:9967421
Length = 297
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 71 RRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPPP 214
R S + SR +A+T + +R+ EE+ + + E P VPPP
Sbjct: 236 RESAARSRARKQAYTHELEIKVSRLEEENERLRKQKEVEKILPSVPPP 283
>At2g01270.1 68415.m00040 thioredoxin family protein low similarity
to quiescin [Homo sapiens] GI:13257405; contains Pfam
profiles PF00085: Thioredoxin, PF04777: Erv1 / Alr
family
Length = 495
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 43 WLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
+L SNQ + + ++EH K L+ Y P + +Y+
Sbjct: 402 YLSSNQKSIEWDHEHVYKFLKNYYGPKLVSLYK 434
>At2g41070.3 68415.m05073 basic leucine zipper transcription factor
(BZIP12) nearly identical to basic leucine zipper
transcription factor [Arabidopsis thaliana] GI:21694632;
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 262
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 71 RRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPPP 214
R S + SR +A+T + +R+ EE+ ++ R E P PPP
Sbjct: 201 RESAARSRARKQAYTHELEIKVSRLEEENEKLRRLKEVEKILPSEPPP 248
>At2g41070.2 68415.m05072 basic leucine zipper transcription factor
(BZIP12) nearly identical to basic leucine zipper
transcription factor [Arabidopsis thaliana] GI:21694632;
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 262
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 71 RRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPPP 214
R S + SR +A+T + +R+ EE+ ++ R E P PPP
Sbjct: 201 RESAARSRARKQAYTHELEIKVSRLEEENEKLRRLKEVEKILPSEPPP 248
>At2g41070.1 68415.m05071 basic leucine zipper transcription factor
(BZIP12) nearly identical to basic leucine zipper
transcription factor [Arabidopsis thaliana] GI:21694632;
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 262
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 71 RRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPPP 214
R S + SR +A+T + +R+ EE+ ++ R E P PPP
Sbjct: 201 RESAARSRARKQAYTHELEIKVSRLEEENEKLRRLKEVEKILPSEPPP 248
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 53 PTSWPTRRSMSTSRKNWKAFTIR*LRRCTR--VPEESPEVCRASRAEHPEPEVPPPGLEA 226
P S T S S S + K+ + R R VP E P S + H VP G A
Sbjct: 89 PPSSLTSPSTSASPRIQKSLNVSPSRSRDRPAVPREKPVTALRSSSFHGSRNVPKGGNTA 148
Query: 227 LAPP 238
+PP
Sbjct: 149 KSPP 152
>At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
[Glycine max]; contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 475
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 188 HPEPEVPPPGLEALAPPSR 244
HP P PPP LE PP +
Sbjct: 40 HPLPPPPPPPLETANPPDQ 58
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 143 VPEESPEVCRASRAEHPEPEVPPPGLEALAPP 238
+P E P A + + P PPPG AL PP
Sbjct: 205 IPVEPPLTMSAEKESYA-PLPPPPGRAALPPP 235
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 158 PEVCRASRAEHPEPEVPPPGLEALAPP 238
P + A R P +PPPG AL PP
Sbjct: 236 PPLPMAVRKGVAAPPLPPPGTAALPPP 262
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAP 235
P P++ SR + P P PPP ++ P
Sbjct: 332 PTLPPQLVEPSRVQSPSPPPPPPVIQPELP 361
>At5g01570.1 68418.m00072 hypothetical protein hypothetical protein
T16O11.19 - Arabidopsis thaliana, EMBL:AC010871
Length = 157
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELE 105
D Q LD C +S ++AD+EE E QKEL+
Sbjct: 58 DLQKKLDVCKEKTDEANS-EIADEEEIERLQKELD 91
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 152 ESPEVCRASRAEHPEPEVPPPGLEALAPPSRRS 250
E P+ C + P+P++ P + + P SRR+
Sbjct: 462 ELPQSCGEGTTDRPKPKLKPLPWDKVRPSSRRT 494
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 158 PEVCRASRAEHPEPEVPPPGLEALAPP 238
PE R E P P PPP L L PP
Sbjct: 65 PEPPLPPRFELPPPLFPPPPLPRLPPP 91
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 158 PEVCRASRAEHPE-PEVPPPGLEALAPPSRRSI 253
PE+ +R + P+ P+ PP ++ L PP ++ +
Sbjct: 61 PELLSRARPQFPQSPQQPPQPIQTLPPPIQQQL 93
>At1g70250.1 68414.m08082 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 799
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 167 CRASRAEHPEPEV-PPPGLEALAPPSRRS 250
C S A P P++ PPP + L PP S
Sbjct: 95 CSGSGAPPPPPDLFPPPSAQMLPPPPASS 123
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 182 AEHPEPEVPPPGLEALAPP 238
A P P PPPG +A PP
Sbjct: 546 AAAPPPPPPPPGTQAAPPP 564
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAPP 238
P P RA+ A P P PPPG A PP
Sbjct: 523 PPPPPPPPRAAVAPPPPP--PPPGTAAAPPP 551
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSINQ 259
P E P+V AE P+ PPP PPS++S +
Sbjct: 194 PAEKPKVESTKVAEKPKAPSPPP-----PPPSKQSAKE 226
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 143 VPEESPEVCRAS--RAEHPEPEVPPPGLEALAPPSR 244
+P E P+ + S +A P P VP P + + A P R
Sbjct: 352 LPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPR 387
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAPP 238
P +P++ ++ P P PPPG PP
Sbjct: 373 PVPAPQMPSSAGPPRPPPPAPPPGSGGPKPP 403
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 143 VPEESPEVCRAS--RAEHPEPEVPPPGLEALAPPSR 244
+P E P+ + S +A P P VP P + + A P R
Sbjct: 352 LPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPR 387
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAPP 238
P +P++ ++ P P PPPG PP
Sbjct: 373 PVPAPQMPSSAGPPRPPPPAPPPGSGGPKPP 403
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 71 RRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPPP 214
R S + +R FT+ R+ ++ P + R E P P VPPP
Sbjct: 88 RSSETAARSLDSPFTLSQSRKSSKPSHLKPLNENSHRLETPTPMVPPP 135
>At3g16565.1 68416.m02118 alanyl-tRNA synthetase-related low
similarity to SP|Q56273 Alanyl-tRNA synthetase (EC
6.1.1.7) (Alanine--tRNA ligase) (AlaRS) {Thiobacillus
ferrooxidans}
Length = 271
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 70 KEEYEHKQKELEGIYNPIITK 132
+EE++ KQKELE N +I+K
Sbjct: 172 QEEFQVKQKELEAEANELISK 192
>At2g37870.1 68415.m04649 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 115
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 118 DCKCLPILSACAHTPPCRPAGWNP 47
+C +PI A A PC PA NP
Sbjct: 26 ECGRMPINQAAASLSPCLPATKNP 49
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPII 126
D T+L++C ++W D +Q K++ E +KELE + +I
Sbjct: 262 DLTTVLERCLHRLEW-DRSQEQQKKK-EEDEKELERVQMAMI 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,849,673
Number of Sequences: 28952
Number of extensions: 125498
Number of successful extensions: 577
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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