Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30090
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27840.1 68417.m03998 expressed protein                             30   2.1  
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s...    28   8.6  

>At4g27840.1 68417.m03998 expressed protein
          Length = 260

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 272 SPGRK--TLLPVLKKPNRIEKYQKHISTATTNESH 370
           S GRK   L+P+L KP R+ K +K + T   +E H
Sbjct: 159 SKGRKGGALMPLLGKPLRVLKNKKRLQTEAKSEGH 193


>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 785

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 245 IITG*YFAQSPGRKTLLPVLKKPNRIEKYQKHISTAT 355
           I+   YFA    RK+L   LK P+  E++Q+ IS  T
Sbjct: 289 ILPNSYFANLRWRKSLESFLKNPDDDERHQEQISHRT 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,215
Number of Sequences: 28952
Number of extensions: 333693
Number of successful extensions: 828
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)