Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30084
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   4.8  
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    28   6.3  
At4g14260.1 68417.m02199 expressed protein contains Pfam profile...    27   8.3  

>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 77  CTDSCKDANHYCPNCNAYIGSYNR*IFQLV 166
           C+  C + ++ CP C+  IG+Y   I + V
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYRSRIMERV 106


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77  CTDSCKDANHYCPNCNAYIGSYNR*IFQLV--Q*IINCKN 190
           C+  CK   + CP C+  IG +   I + +    +++C N
Sbjct: 70  CSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPN 109


>At4g14260.1 68417.m02199 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295);
           expression supported by MPSS
          Length = 379

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 489 LYFLKNNFNVPTF*TTLCSLRYLNITPVSCI-FVYF 593
           +YF+ NNF V    T  CS  Y ++ P+  + F Y+
Sbjct: 337 IYFVGNNFGVYDLTTETCSTFYTSVRPLKNVSFPYW 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,809,484
Number of Sequences: 28952
Number of extensions: 251535
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)