Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30076
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 138 4e-33
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 138 4e-33
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 138 4e-33
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 138 4e-33
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 90 1e-18
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 83 2e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 53 2e-07
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 52 5e-07
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 0.92
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 30 1.6
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 29 2.8
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 29 2.8
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 29 2.8
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 3.7
At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 6.5
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 28 6.5
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 28 6.5
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 28 6.5
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 6.5
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 27 8.6
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 27 8.6
At1g01060.2 68414.m00007 myb family transcription factor contain... 27 8.6
At1g01060.1 68414.m00006 myb family transcription factor contain... 27 8.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 138 bits (333), Expect = 4e-33
Identities = 66/86 (76%), Positives = 76/86 (88%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T P YS+ R++EI KEVSSY+KK+
Sbjct: 156 DATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 106 bits (254), Expect = 2e-23
Identities = 52/87 (59%), Positives = 62/87 (71%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEP 226
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RP+DKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVG 253
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKD 307
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 138 bits (333), Expect = 4e-33
Identities = 66/86 (76%), Positives = 76/86 (88%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T P YS+ R++EI KEVSSY+KK+
Sbjct: 156 DATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 106 bits (254), Expect = 2e-23
Identities = 52/87 (59%), Positives = 62/87 (71%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEP 226
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RP+DKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVG 253
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKD 307
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 138 bits (333), Expect = 4e-33
Identities = 66/86 (76%), Positives = 76/86 (88%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T P YS+ R++EI KEVSSY+KK+
Sbjct: 156 DATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 106 bits (254), Expect = 2e-23
Identities = 52/87 (59%), Positives = 62/87 (71%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEP 226
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RP+DKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVG 253
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKD 307
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 138 bits (333), Expect = 4e-33
Identities = 66/86 (76%), Positives = 76/86 (88%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
RDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIKKL 258
D+T P YS+ R++EI KEVSSY+KK+
Sbjct: 156 DATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 106 bits (254), Expect = 2e-23
Identities = 52/87 (59%), Positives = 62/87 (71%)
Frame = +3
Query: 249 QEIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP 428
+++GYNP + FVPISG+ GDNM+E ST + W+KG L+EALD I P
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEP 226
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVG 509
RP+DKPLRLPLQDVYKIGGIGTVPVG
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVG 253
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
R ETG++KPG +V F+P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKD 307
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 180
+ ++ NMI+G SQAD VL+++A GEFE G + GQTREH LA TLGV +LIV VNKM
Sbjct: 190 KSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKM 249
Query: 181 DSTEPPYSEPRFEEIKKEVSSYIK 252
D +S+ R++EI++++ ++K
Sbjct: 250 DDPTVNWSKERYDEIEQKMVPFLK 273
Score = 37.1 bits (82), Expect = 0.011
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +3
Query: 258 GYNPAA-VAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEALDAILPP 428
GYN V F+PISG G NM + + PW W G E LD+I P
Sbjct: 276 GYNTKKDVVFLPISGLMGKNMDQRMGQEICPW---W---------SGPSFFEVLDSIEIP 323
Query: 429 ARPTDKPLRLPLQDVYKIGGIGTVPVGDLK 518
R + P R+P+ D +K +GTV +G ++
Sbjct: 324 PRDPNGPFRMPIIDKFK--DMGTVVMGKVE 351
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNK 177
+DF+ NMI G +QAD A+L++ A G FEAG GQTREHA + GV+Q+IV +NK
Sbjct: 328 KDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAINK 387
Query: 178 MDSTEPPYSEPRFEEIKKEVSSYIK 252
MD YS+ RF+ IK+ V S+++
Sbjct: 388 MDIV--GYSKERFDLIKQHVGSFLQ 410
Score = 34.7 bits (76), Expect = 0.057
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 231 GSILIHQEIGYNPAAVAFVPISGWHGDNMLE-PSTKMPWFKGWQVERKEGKADGKCLIEA 407
GS L Q + +++ ++P+S N++ PS W G CL++A
Sbjct: 406 GSFL--QSCRFKDSSLTWIPLSAMENQNLVAAPSDNR--LSSWY--------QGPCLLDA 453
Query: 408 LDAILPPARPTDKPLRLPLQDVYKIGGIGTV 500
+D++ P R KPL +P+ D + G V
Sbjct: 454 VDSVKSPDRDVSKPLLMPICDAVRSTSQGQV 484
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 509 RFETGVLKPGTIVVFSPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 670
+ E G ++PG+ V+ P+ ++S+E +A A GDNV ++ + +
Sbjct: 489 KLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQ 542
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 183
D++KNMITG +Q D A+L+V+ G QT+EH LLA +GV ++V +NK D
Sbjct: 154 DYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPDMVVFLNKED 206
Query: 184 STEPPYSEPRFE-EIKKEVSSY 246
+ E E+++ +SSY
Sbjct: 207 QVDDAELLELVELEVRELLSSY 228
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 396 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVG 509
L++A+D +P P R T+ P L ++DV+ I G GTV G
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATG 307
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 500 ARRRFETGVLKPGTIVVFSPANITTE--VKSVEMHHEALQEAVPGDNVGFNVKNV 658
A R E G +K G V T V VEM + L EA+ GDNVG ++ +
Sbjct: 305 ATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGI 359
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = +1
Query: 4 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 183
D++KNMITG +Q D +L+V+ G QT+EH LLA +GV L+ +NK+D
Sbjct: 142 DYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVD 194
Query: 184 STEPPYSEPRFEEIKKEVSSYIK 252
+ P E +E+ S+ K
Sbjct: 195 VVDDPELLELVEMELRELLSFYK 217
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 396 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGDLK 518
L++A+D +P P R DKP +P++DV+ I G GTV G ++
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIE 290
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 369 KEGKADGKCLIEALDAILPPARPTDKP 449
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 645 LKPTLSPGTASWRASWCISTDLTSVVMLAGEKTTMVPGFNTPVSNLRR 502
L+P+LS + C+S LT V ML+ E TT++P + P R+
Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLSAE-TTLLPARSKPSEKKRK 474
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 351 GWQVERKEGKADGKCLIEALDAILPPARPTD---KPLRLPLQDVYKIGGIGTVPVGDLKL 521
GW + + DG ++ AI P PT+ + LRL + D+ ++G GDLKL
Sbjct: 4 GWSLHNR----DGTQILHGSGAIHPTQSPTEAEAEALRLAVLDLRRLGYSHVTFCGDLKL 59
Query: 522 V 524
+
Sbjct: 60 I 60
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 292 FLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 471
FL+G+ T+ C+ S D K+ +L + A PS LP P C+ P +
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76
Query: 472 YTKSVV 489
TK VV
Sbjct: 77 -TKPVV 81
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 292 FLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 471
FL+G+ T+ C+ S D K+ +L + A PS LP P C+ P +
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76
Query: 472 YTKSVV 489
TK VV
Sbjct: 77 -TKPVV 81
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 318 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 416
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 499 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 395
T + + +TSC RRG GR+ GR S S++
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 19 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 198
M+ G + D A+L++AA QT EH + +K +I+ NK+D
Sbjct: 144 MLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKIDLINEK 197
Query: 199 YSEPRFEEIKKEVSS 243
+ + E I+K +++
Sbjct: 198 AATEQHEAIQKFITN 212
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 19 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 198
M+ G + D A+L++AA QT EH + +K +I+ NK+D
Sbjct: 144 MLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKIDLINEK 197
Query: 199 YSEPRFEEIKKEVSS 243
+ + E I+K +++
Sbjct: 198 AATEQHEAIQKFITN 212
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 245 TSRNWLQPSCCRFRAHFWMARRQHVGAFNQNALVQGM 355
T+ +W+ C AHF RR +GAF A G+
Sbjct: 684 TAGDWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGL 720
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 85 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 243
E+G +TR+H G++ LI+ ++D E R E K VS+
Sbjct: 629 ESGRKYEKETRDHVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSA 681
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -3
Query: 559 GGKDNNGTWFQHTSFKSPTGTVPIPPILYTSCRGRRRGLSVGRAGGRM----ASRASMRH 392
G DN + ++++ G +P PP YT RR S GG M RA +R
Sbjct: 23 GNGDNRVIMNHYKNYEA--GLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQ 80
Query: 391 FPSAL 377
PS L
Sbjct: 81 IPSWL 85
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 19 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 198
M+ G + D A+LI+AA QT EH + +K +I+ NK+D +
Sbjct: 136 MLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHLKDIIIIQNKIDLIQEN 189
Query: 199 YSEPRFEEIKKEVSS 243
+ + E+I++ +++
Sbjct: 190 EAIKQHEDIQRFITN 204
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 369 KEGKADGKCLIEALDAILPPARPTDKP 449
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 369 KEGKADGKCLIEALDAILPPARPTDKP 449
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,425
Number of Sequences: 28952
Number of extensions: 386984
Number of successful extensions: 1284
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -