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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30075
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           107   1e-23
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           107   1e-23
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   5.8  
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST...    28   5.8  
At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden...    28   7.6  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  107 bits (256), Expect = 1e-23
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
           V KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+IL
Sbjct: 75  VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134

Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
           VDP+H A+R DP+INWI N VHKHR
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKHR 159



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +1

Query: 34  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 213
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 214 VF 219
           V+
Sbjct: 61  VY 62



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +2

Query: 509 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
           E+RGLTS G+ +RGL GKGH   + +  SRRA W + N++ LRR R
Sbjct: 160 ELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  107 bits (256), Expect = 1e-23
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 434
           V KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+IL
Sbjct: 75  VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134

Query: 435 VDPSHKAIRRDPKINWIVNAVHKHR 509
           VDP+H A+R DP+INWI N VHKHR
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKHR 159



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +1

Query: 34  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 213
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 214 VF 219
           V+
Sbjct: 61  VY 62



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +2

Query: 509 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 643
           E+RGLTS G+ +RGL GKGH   + +  SRRA W + N+L LRR R
Sbjct: 160 ELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 387 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 488
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
           identical to homeobox protein SHOOT MERISTEMLESS (STM)
           SP:Q38874 from [Arabidopsis thaliana]
          Length = 382

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
 Frame = -1

Query: 414 CMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QRTL--AA 241
           C   ++ P   ++H  H +D QH  QQ  +G A+ S      S       P Q T    A
Sbjct: 24  CPMMMMMPPIMTSHQHHGHDHQH-QQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVA 82

Query: 240 TTSHTDS---EYNITLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYPH 106
           ++S   S    Y++         +G + PC   S+  + +  ++ +PH
Sbjct: 83  SSSSPSSCAPAYSLMEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPH 130


>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 527

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/94 (24%), Positives = 48/94 (51%)
 Frame = +3

Query: 432 LVDPSHKAIRRDPKINWIVNAVHKHRRCVV*LRLVAAPEVSARDIDTLKQREAHAGQLGS 611
           L++PS K++   P++++ V++ H   + +   +L+A    S+RD + +    A +   G 
Sbjct: 23  LLNPS-KSLSHLPRVSFSVSSPHS-LKLMTSTKLIAMASASSRDFE-MSNLTALSPLDG- 78

Query: 612 DATLFNYVANDKHLSKTVSDFPFAYFCMQMESQW 713
                 Y    K L+ ++S+F   YF + +E +W
Sbjct: 79  -----RYWGKVKDLASSMSEFGLIYFRVLVEIKW 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,483
Number of Sequences: 28952
Number of extensions: 332526
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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