Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30073
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 138 9e-34
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 138 9e-34
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 137 2e-33
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 137 2e-33
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 137 2e-33
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 136 3e-33
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 62 7e-11
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 62 1e-10
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 62 1e-10
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 62 1e-10
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 62 1e-10
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 62 1e-10
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 62 1e-10
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 62 1e-10
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 62 1e-10
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 36 0.006
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 33 0.069
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 29 1.1
At3g26855.1 68416.m03360 hypothetical protein 28 2.0
At5g04190.1 68418.m00407 phytochrome kinase substrate-related co... 27 4.5
At2g44810.1 68415.m05576 defective in anther dehiscence1 (DAD1) ... 27 4.5
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 26 6.0
At4g04860.1 68417.m00708 Der1-like family protein / degradation ... 26 6.0
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080... 26 7.9
At3g22160.1 68416.m02797 VQ motif-containing protein contains PF... 26 7.9
At1g71870.1 68414.m08308 MATE efflux family protein contains Pfa... 26 7.9
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 138 bits (334), Expect = 9e-34
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
LAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 183 LEKDYEEVGMD 215
LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 138 bits (334), Expect = 9e-34
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
LAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 183 LEKDYEEVGMD 215
LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 137 bits (332), Expect = 2e-33
Identities = 61/71 (85%), Positives = 69/71 (97%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
LAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 183 LEKDYEEVGMD 215
LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 137 bits (332), Expect = 2e-33
Identities = 61/71 (85%), Positives = 69/71 (97%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
LAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 183 LEKDYEEVGMD 215
LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 137 bits (332), Expect = 2e-33
Identities = 61/71 (85%), Positives = 69/71 (97%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
LAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 183 LEKDYEEVGMD 215
LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 136 bits (330), Expect = 3e-33
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 182
LAKVQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 427
Query: 183 LEKDYEEVG 209
LEKDYEEVG
Sbjct: 428 LEKDYEEVG 436
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 62.5 bits (145), Expect = 7e-11
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 362 IKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 421
Query: 192 DYEE 203
+Y++
Sbjct: 422 EYQQ 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 192 DYEE 203
+Y++
Sbjct: 421 EYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 192 DYEE 203
+Y++
Sbjct: 421 EYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 62.1 bits (144), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 192 DYEE 203
+Y++
Sbjct: 421 EYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 62.1 bits (144), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 192 DYEE 203
+Y++
Sbjct: 421 EYQQ 424
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 62.1 bits (144), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 362 LKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 421
Query: 192 DYEE 203
+Y++
Sbjct: 422 EYQQ 425
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 61.7 bits (143), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
Query: 192 DYEE 203
+Y++
Sbjct: 421 EYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 61.7 bits (143), Expect = 1e-10
Identities = 24/61 (39%), Positives = 41/61 (67%)
Frame = +3
Query: 21 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 200
A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
Query: 201 E 203
+
Sbjct: 424 Q 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 61.7 bits (143), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +3
Query: 12 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 191
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
Query: 192 DYEE 203
+Y++
Sbjct: 421 EYQQ 424
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3
Query: 3 LAKVQRAVCMLSNTTAIAE 59
LAKVQRAVCM+SN+T++AE
Sbjct: 368 LAKVQRAVCMISNSTSVAE 386
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 32.7 bits (71), Expect = 0.069
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 70 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 177
A ++S + +P+V+S S R WR SS P+R W
Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 198 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 82
R +R +PG +G+ R+ PP P R S + H +T +T
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 91 SCTPSVLSCTGTSVRVWRRESSPK 162
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At5g04190.1 68418.m00407 phytochrome kinase substrate-related
contains similarity to Swiss-Prot:Q9SWI1 phytochrome
kinase substrate 1 [Arabidopsis thaliana]
Length = 406
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 151 SSPKPVRTWLPSRRITKKSAWTPLKARVREPKS 249
SSP+P+R +PS +T+ +T K R P S
Sbjct: 183 SSPEPIRLTIPSNTVTRSIDYTANK-EARAPVS 214
>At2g44810.1 68415.m05576 defective in anther dehiscence1 (DAD1)
identical to DEFECTIVE IN ANTHER DEHISCENCE1
[Arabidopsis thaliana] GI:16215706; contains Pfam
profile PF01764: Lipase
Length = 357
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -2
Query: 254 LVLFGSLTLAFSGVHADFFVILLEGSQVLTGFGELSLLHTLT--DVPVHESTLGVHEVEL 81
+V G L+L SGVH+ ++ E +++L +G+ L T+T + +TL ++++
Sbjct: 161 MVESGFLSLYTSGVHSLRDMVREEIARLLQSYGDEPLSVTITGHSLGAAIATLAAYDIKT 220
Query: 80 VVKASP 63
K +P
Sbjct: 221 TFKRAP 226
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 210 CRLLRNPSRGQPGPHGLRRTLPPPYP 133
CR NP+ G H LR PPP P
Sbjct: 79 CRPPSNPATTNSGHHQLRPPPPPPPP 104
>At4g04860.1 68417.m00708 Der1-like family protein / degradation in
the ER-like family protein contains Pfam profile:
PF04511 Der1-like family
Length = 244
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 227 AFSGVHADFFVILLEGSQVLTG 162
+F G ADF +LL G+ VLTG
Sbjct: 88 SFRGKTADFLYMLLFGASVLTG 109
>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
At5g37170, At2g05090
Length = 566
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 212 HADFFVILLEGSQVLTGFGELSLLHTLTDVPVHESTLGVHEVELVVKASPS 60
H + V+L+ +++ GE+S+ V + + V EVEL VK+ PS
Sbjct: 216 HDEKTVVLIRYAKINNFKGEISITSAFDVSEVIINPVHVPEVELFVKSLPS 266
>At3g22160.1 68416.m02797 VQ motif-containing protein contains
PF05678: VQ motif
Length = 192
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 76 TTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPSRRITKKSAWTP 219
TTS+T+ T + G + + R SP+ R P+RR ++ S TP
Sbjct: 19 TTSTTASTAVTTTTAGDTTSIDSR-LSPETGRVTKPTRRRSRASRRTP 65
>At1g71870.1 68414.m08308 MATE efflux family protein contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 510
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 160 KPVRTWLPSRRITKKSAWTPLKA 228
+P+R +L S+R+TK W L A
Sbjct: 162 QPLRVYLRSQRVTKPMMWCTLAA 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,911,244
Number of Sequences: 28952
Number of extensions: 116750
Number of successful extensions: 527
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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