Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30063
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 104 4e-23
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 101 2e-22
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 101 3e-22
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 33 0.076
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.13
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.13
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.70
At4g34630.1 68417.m04918 expressed protein 29 1.6
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)... 28 3.8
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)... 28 3.8
At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to... 28 3.8
At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain... 27 5.0
At3g23320.1 68416.m02941 hypothetical protein 27 8.7
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 104 bits (249), Expect = 4e-23
Identities = 46/93 (49%), Positives = 64/93 (68%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKN 290
K K+S++K F KV+NY H+M L LKN
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKN 93
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +2
Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKF-SAKDL 307
C ++ P + ++D + ++ + K F + + TRYT+D + SA +
Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAI 100
Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
K+ + +FEER+K+GKN+WFF KLRF
Sbjct: 101 SSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 101 bits (243), Expect = 2e-22
Identities = 45/95 (47%), Positives = 65/95 (68%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296
K K+S++K F+K+VNY HLM L LK A
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95
Score = 53.6 bits (123), Expect = 7e-08
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKD-L 307
C ++ P + ++D + ++ + K F + L TRYT+D ++ + D L
Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100
Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
K K+ + + EER+K+GKN+WFF KLRF
Sbjct: 101 KSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 101 bits (242), Expect = 3e-22
Identities = 44/95 (46%), Positives = 64/95 (67%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296
K K+S++K F+K+VNY HLM L LK A
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKD-L 307
C ++ P + ++D + ++ + K F + L TRYT+D ++ + D L
Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100
Query: 308 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
+ K+ + + EER+K+GKN+WFF KLRF
Sbjct: 101 QSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 33.5 bits (73), Expect = 0.076
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.13
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.13
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 30.3 bits (65), Expect = 0.70
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 338 FNTRVRFEERYKSGKNKWFF 397
+N R + E+RYKS K KWF+
Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 99 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 212
D+G D+ Y ++ + PR V K++G+ ++ K K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167
>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
identical to transcription factor (TGA1) GI:16550 from
[Arabidopsis thaliana]
Length = 368
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 84 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMQH 260
V ++ GT+ P+ A R+P K+ +R+ +N+ ++S+++ V
Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116
Query: 261 VIQLTSALKNSAQK 302
+IQL L + Q+
Sbjct: 117 LIQLEQELDRARQQ 130
>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
identical to transcription factor (TGA1) GI:16550 from
[Arabidopsis thaliana]
Length = 368
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 84 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMQH 260
V ++ GT+ P+ A R+P K+ +R+ +N+ ++S+++ V
Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116
Query: 261 VIQLTSALKNSAQK 302
+IQL L + Q+
Sbjct: 117 LIQLEQELDRARQQ 130
>At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 389
Score = 27.9 bits (59), Expect = 3.8
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 398 GRTTCSSHFCTSLQNVLAC*NAASYVLQGLSGLLR*IFQS*SQLYNVLHQVIIVYN-LHE 222
G T S+ F ++ NVL A ++VL + L F+ + V+ VI V L
Sbjct: 95 GMTYTSATFASATANVLP---AITFVLAIIFRLESVNFKKVRSIAKVVGTVITVSGALLM 151
Query: 221 RLYLGPLVDFI 189
LY GP+VDFI
Sbjct: 152 TLYKGPIVDFI 162
>At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to
Af10-protein (GI:1724114) [Avena fatua]; similar to
clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]; Af10-protein, Avena fatua, EMBL:U80041
Length = 560
Score = 27.5 bits (58), Expect = 5.0
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -1
Query: 366 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVASSDY-SLQPSRKALSWTSCGFY 190
LSS S F GSF+S + NF K R +DY S Q SR+ + T Y
Sbjct: 165 LSSTGITYKSGSSASFGGSFQSGSSNFDSYKDRDSREDKNDYESFQKSRRGVK-TEEQSY 223
Query: 189 SFPSSCALSGGT 154
+ S + G T
Sbjct: 224 TSKKSFSRYGST 235
>At3g23320.1 68416.m02941 hypothetical protein
Length = 191
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 23 NEAG*SSAGLKWPVRGSQG 79
N AG +GL+W +R SQG
Sbjct: 46 NHAGRQDSGLRWIIRNSQG 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,545,738
Number of Sequences: 28952
Number of extensions: 185112
Number of successful extensions: 580
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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