Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30060
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 167 5e-42
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 162 2e-40
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 131 4e-31
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.44
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.58
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof... 30 1.3
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.8
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 4.1
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 4.1
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 4.1
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 4.1
At1g32190.1 68414.m03959 expressed protein 27 7.1
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 9.4
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 9.4
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 167 bits (406), Expect = 5e-42
Identities = 84/163 (51%), Positives = 109/163 (66%)
Frame = +1
Query: 25 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 204
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 205 KKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 384
T G +D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 72 --TGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 385 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
P G+ TVL++G +N+REAV+HFGPAPG P SH+KPYVR KG K
Sbjct: 130 PLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 162 bits (393), Expect = 2e-40
Identities = 82/163 (50%), Positives = 108/163 (66%)
Frame = +1
Query: 25 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 204
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 205 KKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 384
T G +D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 72 --TGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 385 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
P G+ TVL++G +N+REAV+HFGPAPG P S+TKPYVR KG K
Sbjct: 130 PLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 131 bits (316), Expect = 4e-31
Identities = 68/122 (55%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Frame = +1
Query: 151 MSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARAR 330
MS++N+ P+S+SRL R+M + G G +DVR+ +P +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDGKD--GKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 331 ILAAGGEILTFDQLALRAPT-GKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 507
I AGGE LTFDQLAL PT + TVL++G +N REAV+HFGPAPG P SHTKPYVR G
Sbjct: 59 IHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTG 118
Query: 508 LK 513
K
Sbjct: 119 KK 120
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 454 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 362
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 297 CSSCYRKSSCTHFGCWRRNSYF 362
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 629
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 327 CTSFFGNMKSSHRHLRYLVQSHVILTVPTTTAIKPSRVGLLHVARQTRHRDWWPVD 160
C+ F ++ H HL Q H +P+ P R+ + + RDW PVD
Sbjct: 219 CSKKFSTRQACHDHLE---QEHATGLIPSQRMHMPQRISEDWADKVSSVRDWKPVD 271
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 349 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 441
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAV 441
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAV 441
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 386
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 438 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 316
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 297 CSSCYRKSSCTHFGCWR 347
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 349 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 441
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 349 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 441
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,138,029
Number of Sequences: 28952
Number of extensions: 287910
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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