Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30058
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    29   5.2  
At1g57565.1 68414.m06532 hypothetical protein                          28   6.8  
At1g19320.1 68414.m02402 pathogenesis-related thaumatin family p...    28   6.8  
At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative ...    28   9.0  

>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +1

Query: 400  SASATRKKDRLQLKSTCRRWRLTAVMWTTSFPTRTTNQRPLRRCNEQATYGSVNGGVVHC 579
            S S T K       + C RW LT      +  ++ ++ +PL +   +  YG  N      
Sbjct: 842  SVSLTNKFQMAVSLTACNRWLLTGTPTPNTPNSQLSHIQPLLKFLHEEVYGE-NPKFWEA 900

Query: 580  GVLDVVHCFL-DGRRRLLEAQSR 645
            G+L      + +GR RLL+   R
Sbjct: 901  GILRPFEAEMEEGRLRLLQLLQR 923


>At1g57565.1 68414.m06532 hypothetical protein
          Length = 192

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -1

Query: 548 YVACSLHRLRGLWFVVLVGNEVVHITAVSLHRRQVDFNCRRSFFRVADAEKTSRSGVEEI 369
           Y+   LH LR    +V    E      +S+  R     C ++ F  AD      S  EE+
Sbjct: 6   YMKGGLHWLRNDGAIVAFNPETEKARLISI--RFPKELCSKTLFTAADNNLILISATEEV 63

Query: 368 FVVQAVED 345
           F V AVE+
Sbjct: 64  FYVYAVEN 71


>At1g19320.1 68414.m02402 pathogenesis-related thaumatin family
           protein similar to SP:P28493 Pathogenesis-related
           protein 5 precursor (PR-5) from [Arabidopsis thaliana],
           thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 247

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 366 CCSSCRG*PASCPPSSPQRMTEC*IALLLYRANCLLRSYGH*SSSHDCCNSRYRQSYC 193
           CC+     PA+CPP++  ++ +          +    +Y   SS+  C N+ Y  S+C
Sbjct: 195 CCTGAYSTPATCPPTNYSKIFK------QACPSAYSYAYDDASSTFTCTNANYEISFC 246


>At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 301

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 707 ALWHGVEFYEKEKVVGEEFINNGPTY*KTTHRYGTTGRTSSPGCLW 844
           A W     +E +K VG   +   P       +YGT     +PGCL+
Sbjct: 136 AQWKSNSLFEHDKSVGAVVVGLDPNINYYKLQYGTLCVRENPGCLF 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,890
Number of Sequences: 28952
Number of extensions: 339086
Number of successful extensions: 1097
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)