Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30057
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    86   3e-17
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    86   3e-17
At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa...    31   1.1  
At2g26190.1 68415.m03145 calmodulin-binding family protein conta...    30   1.4  
At1g04870.2 68414.m00484 protein arginine N-methyltransferase fa...    29   4.4  
At1g04870.1 68414.m00483 protein arginine N-methyltransferase fa...    29   4.4  
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ...    28   7.6  
At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alp...    28   7.6  

>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 48/97 (49%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   IIVSELLGSWGDNELSPECLDGASNLLKPGGISIPSSYRSYVAPITSPRLWAAAKIATSG 182
           I+VSELLGS+GDNELSPECLDGA   LKP GISIPSSY S++ PIT+ +L+       + 
Sbjct: 438 ILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIQPITASKLY-------ND 490

Query: 183 IPQQKD-KNLETLWVVYMQNKHDIAKQSSSSRLTIHP 290
           +   KD  + ET +VV + +   +A   S    T HP
Sbjct: 491 VKAHKDLAHFETAYVVKLHSVAKLAPSQSVFTFT-HP 526



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +2

Query: 266 VFTFNHPSKAVKDEEGCDKSDYRGLPLTNNRRQATLTWDVQQDN---IMHGFGGYFDCTL 436
           VFTF HP+ + K                NN+R   L + +  D    ++HGF GYFD  L
Sbjct: 520 VFTFTHPNFSTK---------------VNNQRYKKLQFSLPSDAGSALVHGFAGYFDSVL 564

Query: 437 YGNEMISIVPGTHSPGMISW 496
           Y +  + I P T +P M SW
Sbjct: 565 YKDVHLGIEPTTATPNMFSW 584


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 48/97 (49%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   IIVSELLGSWGDNELSPECLDGASNLLKPGGISIPSSYRSYVAPITSPRLWAAAKIATSG 182
           I+VSELLGS+GDNELSPECLDGA   LKP GISIPSSY S++ PIT+ +L+       + 
Sbjct: 438 ILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIQPITASKLY-------ND 490

Query: 183 IPQQKD-KNLETLWVVYMQNKHDIAKQSSSSRLTIHP 290
           +   KD  + ET +VV + +   +A   S    T HP
Sbjct: 491 VKAHKDLAHFETAYVVKLHSVAKLAPSQSVFTFT-HP 526



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
 Frame = +2

Query: 266 VFTFNHPSKAVKDEEGCDKSDYRGLPLTNNRRQATLTWDVQQDN---IMHGFGGYFDCTL 436
           VFTF HP+ + K                NN+R   L + +  D    ++HGF GYFD  L
Sbjct: 520 VFTFTHPNFSTK---------------VNNQRYKKLQFSLPSDAGSALVHGFAGYFDSVL 564

Query: 437 YGNEMISIVPGTHSPGMISWFPVFFQLRHQCE 532
           Y +  + I P T +P M SWFP+FF LR   E
Sbjct: 565 YKDVHLGIEPTTATPNMFSWFPIFFPLRKPVE 596



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 23/50 (46%), Positives = 29/50 (58%)
 Frame = +1

Query: 508 FPIKTPMRVQKGDKITATFWRCVDSRRVWYEWVVEVGNRSTPLHNANGRS 657
           FP++ P+ V     +   FWRC  S +VWYEW V     S P+HN NGRS
Sbjct: 589 FPLRKPVEVHPDTPLEVHFWRCCGSSKVWYEWSVSSPTPS-PMHNTNGRS 637


>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 435

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3   IIVSELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSYVAPITSP 146
           +I+SE +G     E +    +      LKPGG+ +PS    Y+API+ P
Sbjct: 187 VIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHP 235


>At2g26190.1 68415.m03145 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 532

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  LKPGGISIPSSYRSYVAPITSPRLWAAAKIATSGIPQQK 197
           + PG    PS Y    +P  SPR+  + ++A  GIP  +
Sbjct: 489 ISPGSTRFPSPYGPIPSPRPSPRVRVSPRLAYMGIPSPR 527


>At1g04870.2 68414.m00484 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 383

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   IIVSELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSYVAPITS 143
           +I+SE +G +   E +    +      LKP G+  PS  R ++API S
Sbjct: 139 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKS 186


>At1g04870.1 68414.m00483 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 280

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   IIVSELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSYVAPITS 143
           +I+SE +G +   E +    +      LKP G+  PS  R ++API S
Sbjct: 36  VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKS 83


>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
           mRNA binding protein precursor (GI:26453355)
           [Lycopersicon esculentum]
          Length = 406

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 97  IPPGFKRFDAPSKHSGESSLSPQEPNNSETI 5
           IPP   RF  PS  S  SSLS    ++S  +
Sbjct: 24  IPPSLHRFSLPSSSSSFSSLSSSSSSSSSLL 54


>At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial, putative similar to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}; contains Pfam profile PF00676:
           Dehydrogenase E1 component
          Length = 393

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 69  ASNLLKPGGISIPSSYRSYVAPITSPRLWAAAKIATSGIPQQKDKNLET 215
           ++  LKP   ++PSS R +V+  +SP     A   TS + +   +++ET
Sbjct: 10  SNTFLKPAITALPSSIRRHVSTDSSPITIETAVPFTSHLCESPSRSVET 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,860,905
Number of Sequences: 28952
Number of extensions: 414102
Number of successful extensions: 1093
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)