Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30053
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    29   2.6  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    29   2.6  
At1g62240.1 68414.m07021 expressed protein                             29   2.6  
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e...    28   5.9  

>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 AAWLCPWHCWSPWAT*PLTIRW 530
           A WL PW+ WS W   PL   W
Sbjct: 181 AVWLKPWYWWS-WPVLPLGFSW 201


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 AAWLCPWHCWSPWAT*PLTIRW 530
           A WL PW+ WS W   PL   W
Sbjct: 289 AVWLKPWYWWS-WPVLPLGFSW 309


>At1g62240.1 68414.m07021 expressed protein
          Length = 227

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 400 SGDGAFDCGDYELHLESGGGRQRLGSAPGIAGVHGRRDHSPSG 528
           SG G     D  +H+E GGG    G   G  GV G    S SG
Sbjct: 175 SGTGTASGPDVYMHVEGGGGGGGGGGGGGGGGVDGSGSGSGSG 217


>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 296

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 538 HTAHLMVSGHVAHGLQQCQGQSQAAAYHHPILGGVHSHHNRMPH 407
           H AH     H +HG     G   +   H P  G + SH  ++PH
Sbjct: 29  HGAHPAHGAHPSHGAHPSHGAHPSHGAH-PSHGALPSHGGQVPH 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,995
Number of Sequences: 28952
Number of extensions: 322975
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)