Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30051
(291 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 32 0.058
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 32 0.058
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 32 0.058
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont... 28 0.94
At4g03410.2 68417.m00465 peroxisomal membrane protein-related co... 28 1.2
At4g03410.1 68417.m00464 peroxisomal membrane protein-related co... 28 1.2
At1g48430.1 68414.m05414 dihydroxyacetone kinase family protein ... 27 1.6
At3g05380.1 68416.m00588 myb family transcription factor contain... 27 2.2
At4g37300.1 68417.m05281 expressed protein 27 2.9
At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ... 27 2.9
At3g13710.1 68416.m01730 prenylated rab acceptor (PRA1) family p... 26 3.8
At3g11580.2 68416.m01415 DNA-binding protein, putative similar t... 26 3.8
At3g11580.1 68416.m01414 DNA-binding protein, putative similar t... 26 3.8
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi... 26 3.8
At5g27590.1 68418.m03304 hypothetical protein 25 6.6
At4g04650.1 68417.m00680 hypothetical protein 25 6.6
At2g32850.2 68415.m04025 protein kinase family protein contains ... 25 6.6
At2g32850.1 68415.m04024 protein kinase family protein contains ... 25 6.6
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 25 6.6
At5g49110.1 68418.m06079 expressed protein ; expression support... 25 8.8
At5g44313.1 68418.m05425 hypothetical protein 25 8.8
At5g16500.1 68418.m01928 protein kinase family protein contains ... 25 8.8
At5g15680.1 68418.m01834 expressed protein 25 8.8
At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative... 25 8.8
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 25 8.8
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 25 8.8
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 32.3 bits (70), Expect = 0.058
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 71 IDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+ EFE ++D + S AA L ++S TG+H+ D+ ET + S+
Sbjct: 348 VSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSH 398
>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 514
Score = 32.3 bits (70), Expect = 0.058
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 71 IDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+ EFE ++D + S AA L ++S TG+H+ D+ ET + S+
Sbjct: 377 VSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSH 427
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 32.3 bits (70), Expect = 0.058
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 71 IDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+ EFE ++D + S AA L ++S TG+H+ D+ ET + S+
Sbjct: 346 VSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSH 396
>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor (Dentin phosphophoryn DPP,
Dentin sialoprotein DSP) [Homo sapiens]
Length = 792
Score = 28.3 bits (60), Expect = 0.94
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 95 KDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSN 223
+D T A F+ +NA E NHN A D+A +D+K+N
Sbjct: 444 EDDITHEAPSFDPNQKENAEMEE-NHNNFVYADDEAGSDVKTN 485
>At4g03410.2 68417.m00465 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:P42925 22 kDa
peroxisomal membrane protein [Mus musculus]
Length = 361
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 141 ETSVSNSAARDVDTSLYRFSNSSIVLSAGTASVS 40
E +S D D + R N++IVL+AGT +V+
Sbjct: 68 EEELSEDKVEDTDRLMSRGINAAIVLAAGTVAVT 101
>At4g03410.1 68417.m00464 peroxisomal membrane protein-related
contains weak similarity to Swiss-Prot:P42925 22 kDa
peroxisomal membrane protein [Mus musculus]
Length = 317
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 141 ETSVSNSAARDVDTSLYRFSNSSIVLSAGTASVS 40
E +S D D + R N++IVL+AGT +V+
Sbjct: 68 EEELSEDKVEDTDRLMSRGINAAIVLAAGTVAVT 101
>At1g48430.1 68414.m05414 dihydroxyacetone kinase family protein
similar to dihydroxyacetone kinases; contains Pfam
profiles PF02733: DAK1 domain, PF02734: DAK2 domain
Length = 593
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 88 VLELVDSVVRWDGVCISGECDDDVSRG 8
V+ L DS+ WDG G+C + RG
Sbjct: 393 VINLKDSLNEWDGKVGDGDCGSTMCRG 419
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 135 SVSNSAARDVDTSLYRFSNSSIVLSAGTASVSLVSVMMT 19
++ NS + D+ +L+ + + + L GTASV+ + MMT
Sbjct: 70 AIRNSRSVDMVEALFNMNRAYLSLPEGTASVAGLIAMMT 108
>At4g37300.1 68417.m05281 expressed protein
Length = 173
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 116 AAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYNRG 259
A +F++L SQ + G ++S + ET+ SNL+ ++ + G
Sbjct: 63 ADKFQSLQSQTHGKVLGEGDSSAVQDEFLETEYYSNLTAIDKQHHTTG 110
>At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein
contains Pfam domains, PF02733: DAK1 domain and PF02734:
DAK2 domain
Length = 595
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 88 VLELVDSVVRWDGVCISGECDDDVSRG 8
++ L DS+ WDG G+C + RG
Sbjct: 394 IISLKDSLNEWDGKVGDGDCGSTMYRG 420
>At3g13710.1 68416.m01730 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor [Mus
musculus] GI:7716652; contains Pfam profile PF03208:
Prenylated rab acceptor (PRA1)
Length = 188
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 177 VLWFPVSLLAFCETS---VSNSAARDVDTSLYRFSNSSIVLSAGTASVSLVSVMMTSA 13
++W P SL+ F + RDV ++RF + G + +++V +++T+A
Sbjct: 84 LIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNA 141
>At3g11580.2 68416.m01415 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857 and RAV2 GI:3868859, AP2 domain containing
protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
contains Pfam profile PF02362: B3 DNA binding domain
Length = 230
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 62 DNTIDEFENLY-KDVSTSRAAEFETLV--SQNASR--ETGNHNTSGAAADDAETDLKSNL 226
D I + E+L+ K ++ S + LV Q+A + N+N +G + DD T K L
Sbjct: 19 DVAIAQRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGML 78
Query: 227 SEFE 238
FE
Sbjct: 79 LSFE 82
>At3g11580.1 68416.m01414 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857 and RAV2 GI:3868859, AP2 domain containing
protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
contains Pfam profile PF02362: B3 DNA binding domain
Length = 267
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 62 DNTIDEFENLY-KDVSTSRAAEFETLV--SQNASR--ETGNHNTSGAAADDAETDLKSNL 226
D I + E+L+ K ++ S + LV Q+A + N+N +G + DD T K L
Sbjct: 19 DVAIAQRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGML 78
Query: 227 SEFE 238
FE
Sbjct: 79 LSFE 82
>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
protein
Length = 508
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 56 PADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEF 235
P+ ++I F K++ST+ ETL + S E N D+E D+ LS
Sbjct: 18 PSSSSIAIFSTFIKNLSTASEQLPETLDEYSQSEEIWNVIVGRDGDRDSEDDVFKRLSSD 77
Query: 236 ERVK 247
E K
Sbjct: 78 EICK 81
>At5g27590.1 68418.m03304 hypothetical protein
Length = 320
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 113 RAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYNR 256
R VS + +T +N S DDAE+D SN+ E Y +
Sbjct: 98 RYPSLNLFVSFITTVKTLKNNVSRTHGDDAESDRVSNVDENNEAVYEQ 145
>At4g04650.1 68417.m00680 hypothetical protein
Length = 332
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 162 VSLLAFCETSVSNSAARDVDTSLYRFSNSSIVLSAGTASVSL 37
+SLL CE ++ A +++ L F+ + + S G +SL
Sbjct: 286 LSLLGTCEPEITVYKAPEIEVKLDNFNEKTDIYSFGIVFLSL 327
>At2g32850.2 68415.m04025 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 670
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 113 RAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYNRG 259
R + ET +SQ + +N + + DDA S +++F+ K++ G
Sbjct: 412 RNKDLETTISQKNTTPAAANNMTRVSKDDA---FNSFVADFDTTKFDNG 457
>At2g32850.1 68415.m04024 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 650
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 113 RAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYNRG 259
R + ET +SQ + +N + + DDA S +++F+ K++ G
Sbjct: 412 RNKDLETTISQKNTTPAAANNMTRVSKDDA---FNSFVADFDTTKFDNG 457
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 62 DNTIDEFENLYKDVS-TSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLS 229
D I + E + KD++ TS + +++N S N + S DD TD++S+LS
Sbjct: 165 DMHIQKVEAVLKDLTMTSEKSHSSDSLAKNTS---ANVDFSSQKTDDPVTDVRSDLS 218
>At5g49110.1 68418.m06079 expressed protein ; expression supported
by MPSS
Length = 1487
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 71 IDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTS 181
ID +E+L KDV S+ + V +A +T NTS
Sbjct: 802 IDLYESLEKDVGKSKQSNVGKRVRFSACNDTDLGNTS 838
>At5g44313.1 68418.m05425 hypothetical protein
Length = 237
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 113 RAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSE 232
R VS + +T +N S A DDAE+D SN+ E
Sbjct: 61 RYPSLNLFVSFITTVKTLRNNVSRAHDDDAESDRVSNVDE 100
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/64 (18%), Positives = 29/64 (45%)
Frame = +2
Query: 47 DAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNL 226
D +PA ++ F + ++ SR + ++ GN ++S + ++D E + +
Sbjct: 358 DGIPATVPMESFRDKSMSIALSRHGSCSVTPFCISRKDVGNKSSSSSDSEDEEEEKEQKA 417
Query: 227 SEFE 238
+ E
Sbjct: 418 EKEE 421
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 32 LTRDTDAVPADNTIDE--FENLYKD 100
L RD+DA+P+D T+ FE+L K+
Sbjct: 708 LRRDSDAIPSDVTLQSIIFESLDKN 732
>At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative
strong similarity to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958], Pichia angusta
[GI:7331158]; contains Pfam profile PF00483 Nucleotidyl
transferase
Length = 364
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 281 FFLSIGLLRDYILLVRILIDSI 216
F++ IG RDYI +R+ +DS+
Sbjct: 219 FWMDIGQPRDYITGLRLYLDSL 240
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 194 DDAETDLKSNLSEFERVKYNR 256
DD E+D S+ EF+ K NR
Sbjct: 57 DDTESDASSSSGEFDNQKMNR 77
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 281 FFLSIGLLRDYILLVRILIDSI 216
F++ IG RDYI +R+ +DS+
Sbjct: 216 FWMDIGQPRDYITGLRLYLDSL 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,459,483
Number of Sequences: 28952
Number of extensions: 62868
Number of successful extensions: 287
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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