Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30048
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    56   3e-08
At1g74220.1 68414.m08596 expressed protein similar to GB:AAD2007...    29   3.8  
At5g49470.2 68418.m06121 protein kinase family protein contains ...    28   6.6  
At5g49470.1 68418.m06122 protein kinase family protein contains ...    28   6.6  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    28   6.6  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   6.6  
At1g29220.1 68414.m03574 transcriptional regulator family protei...    28   6.6  
At2g07680.1 68415.m00992 ABC transporter family protein                27   8.7  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +2

Query: 260 AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 379
           AG+  GIG VF SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 29  AGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At1g74220.1 68414.m08596 expressed protein similar to GB:AAD20071
           from [Arabidopsis thaliana]
          Length = 316

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 330 REGFLA*PMMREPKTVPIPAPEPATPLSLHQ 238
           + G L  P    P T P+P+P P+TP +++Q
Sbjct: 130 KSGELTFPQPPSPITSPLPSPLPSTPHNVNQ 160


>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = -2

Query: 433 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYS 254
           + +E+Q+++ +++   HS++  E+Q    E +      P +     + + ++TSS +S  
Sbjct: 410 VRNEQQKQQAYQSNSNHSVKS-ESQ--ACESIKASSNEP-MGYWSSSVNVNSTSSSSSCG 465

Query: 253 TVAAPAPMNLAAESMSLVTDVVWKDRTAESCV--GTAGTIC--VWVGT 122
           + ++     +  +S  L  +++W+D T    +  G+ GT+   +W G+
Sbjct: 466 STSSSVMNKVDMDSDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWFGS 513


>At5g49470.1 68418.m06122 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 483

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = -2

Query: 433 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYS 254
           + +E+Q+++ +++   HS++  E+Q    E +      P +     + + ++TSS +S  
Sbjct: 123 VRNEQQKQQAYQSNSNHSVKS-ESQ--ACESIKASSNEP-MGYWSSSVNVNSTSSSSSCG 178

Query: 253 TVAAPAPMNLAAESMSLVTDVVWKDRTAESCV--GTAGTIC--VWVGT 122
           + ++     +  +S  L  +++W+D T    +  G+ GT+   +W G+
Sbjct: 179 STSSSVMNKVDMDSDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWFGS 226


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 25  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 135
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
 Frame = -2

Query: 448 LKVNSLESE-EQQERHHKTEQTHSLRQGETQNGV*EQLLLEG-------GVPGIADD-EG 296
           LKV    S+ EQQ R  KT+  HSL     + GV   LL  G        V  I +  E 
Sbjct: 210 LKVAQYASQLEQQSRFMKTQARHSLNNKLLKYGVKGHLLTAGMCHLCKADVVSITNALEK 269

Query: 295 AEDCSNTSSGTSYSTVAAPAPMNLAAESMSLVTDV 191
            +D   T SGT      A     +  E ++  TDV
Sbjct: 270 YQDLDPTFSGTRECKFLADLASAIDEEDIAKFTDV 304


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 229  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 101
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At1g29220.1 68414.m03574 transcriptional regulator family protein
           similar to Transcriptional regulator protein HCNGP
           (Swiss-Prot:Q02614) [Mus musculus]
          Length = 351

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -2

Query: 325 GVPGIADDEGAEDCSNTSSGTSYSTVAAPAPMNLAAESMSLVTD 194
           G  G+AD E  +D S  SS T       P P    +E +    D
Sbjct: 107 GESGVADGERGDDASGESSDTLLDQFLPPRPRERCSEELQRKID 150


>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 130 PIHRWYLLSLHSSLQ-CGPSRPHRSLRTLTLLPNSLVLVQRQWSSWFRSW 276
           P+++W  + + S+ +     +  R  +T  LL N   L    W +WF  W
Sbjct: 186 PVNKWISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADW 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,773
Number of Sequences: 28952
Number of extensions: 341287
Number of successful extensions: 1207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)