Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30043
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 124 5e-29
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 120 8e-28
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 46 3e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.002
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.002
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.002
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.002
At5g15680.1 68418.m01834 expressed protein 30 1.9
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.3
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 7.5
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.5
At5g11100.1 68418.m01296 C2 domain-containing protein similar to... 27 9.9
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 9.9
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 124 bits (300), Expect = 5e-29
Identities = 54/75 (72%), Positives = 67/75 (89%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFS 687
+AHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ FS
Sbjct: 148 IAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFS 207
Query: 688 KVVEAIKTNFNERYE 732
K++EAIK NFN++YE
Sbjct: 208 KILEAIKANFNDKYE 222
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
N LFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L K P
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 69
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/83 (40%), Positives = 43/83 (51%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 434
+RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 64 QRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESK 122
Query: 435 RPNTIRSGTNTVTKLVEKKKAHL 503
+P ++ G N VT L+E+ KA L
Sbjct: 123 KPIVVKYGLNHVTYLIEQNKAQL 145
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 120 bits (290), Expect = 8e-28
Identities = 53/75 (70%), Positives = 65/75 (86%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFS 687
+AHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+ FS
Sbjct: 147 IAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFS 206
Query: 688 KVVEAIKTNFNERYE 732
K++EAIK NFN++YE
Sbjct: 207 KILEAIKANFNDKYE 221
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
N LFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L K P
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 68
Score = 61.7 bits (143), Expect = 5e-10
Identities = 35/83 (42%), Positives = 43/83 (51%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 434
+RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 63 QRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESK 121
Query: 435 RPNTIRSGTNTVTKLVEKKKAHL 503
+P ++ G N VT L+E+ KA L
Sbjct: 122 KPIVVKYGLNHVTYLIEQNKAQL 144
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +1
Query: 484 RRRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 663
R ++ C +A ++ PI+++ LP LC + GVPY V K L K TC L ++
Sbjct: 64 RGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLK 123
Query: 664 SGDRASFSKVVEAIKTNFNE 723
++ + +KT++ +
Sbjct: 124 PAKGDLTAEELAKLKTDYEQ 143
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRAS 681
+A D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 88 MAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQ 147
Query: 682 FSKVVEAIK 708
+ +AI+
Sbjct: 148 IQHLKDAIE 156
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRAS 681
+A D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 56 MAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQ 115
Query: 682 FSKVVEAIK 708
+ +AI+
Sbjct: 116 IQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRAS 681
+A D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 56 MAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQ 115
Query: 682 FSKVVEAIK 708
+ +AI+
Sbjct: 116 IQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRAS 681
+A D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 56 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQ 115
Query: 682 FSKVVEAIK 708
+ +AI+
Sbjct: 116 IQHLKDAIE 124
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 93 GGQKG*AQEDREYSLR-EEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSRRLKV 269
GG G +D YS + K L + A SG +Q MA P P G + +
Sbjct: 2051 GGTGGSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAAESGI 2110
Query: 270 PP 275
PP
Sbjct: 2111 PP 2112
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 452 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 294
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 491 LLLDQLGDCVCAGSDGVGPLWWRLI 417
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 588 CQGQVPPRCTCTPQDMHMLGSNKCGVW*PRLLLEGRGSHQDELQRALR 731
C+G VP CT D H+ VW +LLE + E+++ LR
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLR 408
>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
from [Lycopersicon esculentum]
Length = 574
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -1
Query: 204 KSGQVPSWLNALTNGKVLWPLLEESIHDLLGLNLFDH 94
K+ VP LN + N + ++E+++HDLL L ++DH
Sbjct: 485 KTRVVPDSLNPVWNQTFDF-VVEDALHDLLTLEVWDH 520
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 413 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 318
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,072
Number of Sequences: 28952
Number of extensions: 345617
Number of successful extensions: 1073
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -